Gm2791 Pseudogene Detail

Summary

• Symbol
  Gm2791
• Name
  predicted gene 2791

• Feature Type
  pseudogene
• IDs
  MGI:3780959
  NCBI Gene: 100040470
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:40171072-40171575 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 22.30 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780959	pseudogene	Chr14:40171072-40171578 (+)
129S1/SvImJ	ENSMUSG00200017234	pseudogene	Chr14:32072796-32073300 (+)
A/J	ENSMUSG00195025106	pseudogene	Chr14:33079251-33079755 (+)
AKR/J	ENSMUSG00220039939	pseudogene	Chr14:32230423-32230927 (+)
BALB/cJ	ENSMUSG00180045877	pseudogene	Chr14:32163539-32164043 (+)
C3H/HeJ	ENSMUSG00175028524	pseudogene	Chr14:32246297-32246801 (+)
C57BL/6NJ	ENSMUSG00215037871	pseudogene	Chr14:32482959-32483463 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005010971	pseudogene	Chr14:32182923-32183427 (+)
CBA/J	ENSMUSG00210041071	pseudogene	Chr14:32495533-32496037 (+)
DBA/2J	ENSMUSG00185015278	pseudogene	Chr14:36722458-36722962 (+)
FVB/NJ	ENSMUSG00205049138	pseudogene	Chr14:32337427-32337931 (+)
JF1/MsJ	ENSUMUG00000037217	pseudogene	Chr14:44001229-44001733 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190043796	pseudogene	Chr14:32535948-32536452 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010033589	pseudogene	Chr14:20549409-20549913 (+)
SPRET/EiJ	ENSMSPG00010003759	pseudogene	Chr14:34312350-34312842 (+)
WSB/EiJ	ENSIUOG00005038780	pseudogene	Chr14:32317076-32317580 (+)

Homology

• Gene Tree
  Gm2791
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000114280 (Evidence)
• NCBI Gene
  100040470

Representative Sequences			Length	Strain/Species
genomic	100040470	NCBI Gene Model | MGI Sequence Detail	504	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm2791:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125130	Chr14:40170344-40170346 (+)	-727 bp