Gm2762 Gene Detail

Summary

• Symbol
  Gm2762
• Name
  predicted gene 2762
• Synonyms
  1700025I17Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:3780931
  NCBI Gene: 100040421
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr13:53547725-53609666 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 27.68 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  1886 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780931	lncRNA gene	Chr13:53547630-53609666 (+)
129S1/SvImJ	ENSMUSG00200036534	lncRNA gene	Chr13:50409170-50470351 (+)
A/J	ENSMUSG00195031455	lncRNA gene	Chr13:49880340-49941465 (+)
AKR/J	ENSMUSG00220009873	lncRNA gene	Chr13:49431089-49492312 (+)
BALB/cJ	ENSMUSG00180009026	lncRNA gene	Chr13:50131634-50192817 (+)
C3H/HeJ	ENSMUSG00175029128	lncRNA gene	Chr13:49912919-49974052 (+)
C57BL/6NJ	ENSMUSG00215007212	lncRNA gene	Chr13:49948246-50010271 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004963	lincRNA gene	Chr13:48602839-48889892 (+)
CAST/EiJ	ENSTCUG00005042102	lncRNA gene	Chr13:50321919-50381848 (+)
CBA/J	ENSMUSG00210027837	lncRNA gene	Chr13:50123113-50184239 (+)
DBA/2J	ENSMUSG00185017039	lncRNA gene	Chr13:50971827-51033001 (+)
FVB/NJ	ENSMUSG00205012864	lncRNA gene	Chr13:49777760-49838933 (+)
JF1/MsJ	ENSUMUG00000039404	lncRNA gene	Chr13:50361636-50423657 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190012567	lncRNA gene	Chr13:50007626-50068848 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010022709	lncRNA gene	Chr13:49232249-49294281 (+)
SPRET/EiJ	ENSMSPG00010033354	lncRNA gene	Chr13:49657501-49719812 (+)
WSB/EiJ	ENSIUOG00005028850	lncRNA gene	Chr13:49444897-49506101 (+)

Homology

• Gene Tree
  Gm2762
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm2762
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  16

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  149
• RefSeq
  1

• Ensembl
  ENSMUSG00000107008 (Evidence)
• NCBI Gene
  100040421

Representative Sequences			Length	Strain/Species
genomic	100040421	NCBI Gene Model | MGI Sequence Detail	61942	C57BL/6J
transcript	NR_037991	RefSeq | MGI Sequence Detail	2339	C57BL/6

Molecular
Reagents

• All nucleic 18

  cDNA 18

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:1917622

References

• Summaries
  All 16

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Gm2762:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119832	Chr13:53547625-53547714 (+)	-55 bp
Tssr119833	Chr13:53547718-53547730 (+)	-1 bp
Tssr119834	Chr13:53595943-53595948 (+)	48,221 bp
Tssr119835	Chr13:53602287-53602293 (+)	54,565 bp