Gm2623 Pseudogene Detail

Summary

• Symbol
  Gm2623
• Name
  predicted gene 2623

• Feature Type
  pseudogene
• IDs
  MGI:3780791
  NCBI Gene: 100040141
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:32995473-32995758 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 17.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  68 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780791	pseudogene	Chr5:32995444-32995803 (+)
129S1/SvImJ	ENSMUSG00200014757	pseudogene	Chr5:28463543-28463828 (+)
A/J	ENSMUSG00195049774	pseudogene	Chr5:27936867-27937152 (+)
AKR/J	ENSMUSG00220009674	pseudogene	Chr5:27958904-27959189 (+)
BALB/cJ	ENSMUSG00180039093	pseudogene	Chr5:27741421-27741706 (+)
C3H/HeJ	ENSMUSG00175050410	pseudogene	Chr5:29721038-29721323 (+)
C57BL/6NJ	ENSMUSG00215041628	pseudogene	Chr5:28461105-28461390 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011567	pseudogene	Chr5:27786174-27786454 (+)
CAST/EiJ	ENSTCUG00005026133	pseudogene	Chr5:27950030-27950315 (+)
CBA/J	ENSMUSG00210048850	pseudogene	Chr5:28688786-28689071 (+)
DBA/2J	ENSMUSG00185018122	pseudogene	Chr5:30552253-30552538 (+)
FVB/NJ	ENSMUSG00205045039	pseudogene	Chr5:27444385-27444670 (+)
JF1/MsJ	ENSUMUG00000054055	pseudogene	Chr5:35142829-35143110 (+)
LP/J	ENSMUSG00230048229	pseudogene	Chr5:35167282-35167567 (+)
NOD/ShiLtJ	ENSMUSG00190016759	pseudogene	Chr5:27715979-27716264 (+)
NZO/HlLtJ	ENSMUSG00225021274	pseudogene	Chr5:40374877-40375162 (+)
PWK/PhJ	ENSLUMG00010048271	pseudogene	Chr5:27858346-27858631 (+)
SPRET/EiJ	ENSMSPG00010044718	pseudogene	Chr5:29023023-29023308 (+)
WSB/EiJ	ENSIUOG00005043123	pseudogene	Chr5:30650312-30650597 (+)

Homology

• Gene Tree
  Gm2623
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  5 involving Gm2623
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000106654 (Evidence)
• NCBI Gene
  100040141

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106654	Ensembl Gene Model | MGI Sequence Detail	286	C57BL/6J
transcript	ENSMUST00000199229	Ensembl | MGI Sequence Detail	286	Not Applicable

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 9
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:100332 Wilson L, et al., Random mutagenesis of proximal mouse chromosome 5 uncovers predominantly embryonic lethal mutations. Genome Res. 2005 Aug;15(8):1095-105

TSS for Gm2623:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45796	Chr5:32995439-32995451 (+)	-28 bp