Gm2617 Pseudogene Detail

Summary

• Symbol
  Gm2617
• Name
  predicted gene 2617

• Feature Type
  pseudogene
• IDs
  MGI:3780785
  NCBI Gene: 100040130
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr19:9300583-9317350 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  12 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780785	pseudogene	Chr19:9300583-9317350 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040205	pseudogene	Chr19:6639067-6645420 (-)
A/J	MGP_AJ_G0040192	pseudogene	Chr19:6308551-6318348 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0040188	pseudogene	Chr19:6458854-6471075 (+)
C3H/HeJ	MGP_C3HHeJ_G0039829	pseudogene	Chr19:6569468-6579315 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040779	pseudogene	Chr19:6806329-6872001 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038917	pseudogene	Chr19:6282740-6292239 (+)
CBA/J	MGP_CBAJ_G0039796	pseudogene	Chr19:6905191-6921534 (-)
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0040034	pseudogene	Chr19:6523464-6535779 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039944	pseudogene	Chr19:6788446-6793404 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040875	pseudogene	Chr19:6456566-6465855 (-)
PWK/PhJ	MGP_PWKPhJ_G0038606	pseudogene	Chr19:5798142-6013766 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038308	pseudogene	Chr19:5941252-5948612 (-)
WSB/EiJ	MGP_WSBEiJ_G0039138	pseudogene	Chr19:6597906-6604511 (+)

Homology

• Gene Tree
  Gm2617
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000101398 (Evidence)
• NCBI Gene
  100040130

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101398	Ensembl Gene Model | MGI Sequence Detail	16768	C57BL/6J
transcript	ENSMUST00000185690	Ensembl | MGI Sequence Detail	1066	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;