Gm2607 Pseudogene Detail

Summary

• Symbol
  Gm2607
• Name
  predicted gene 2607

• Feature Type
  pseudogene
• IDs
  MGI:3780775
  NCBI Gene: 100040113
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:48523037-48523663 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 26.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780775	pseudogene	Chr8:48523037-48523663 (-)
129S1/SvImJ	ENSMUSG00200006769	pseudogene	Chr8:43613905-43614531 (-)
A/J	ENSMUSG00195004413	pseudogene	Chr8:44141479-44142105 (-)
AKR/J	ENSMUSG00220004611	pseudogene	Chr8:43931028-43931654 (-)
BALB/cJ	ENSMUSG00180002962	pseudogene	Chr8:43682452-43683078 (-)
C3H/HeJ	ENSMUSG00175005279	pseudogene	Chr8:43803997-43804623 (-)
C57BL/6NJ	ENSMUSG00215011820	pseudogene	Chr8:43613549-43614175 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020423	pseudogene	Chr8:43633685-43634316 (-)
CBA/J	ENSMUSG00210019365	pseudogene	Chr8:43684647-43685273 (-)
DBA/2J	ENSMUSG00185006075	pseudogene	Chr8:49567991-49568617 (-)
FVB/NJ	ENSMUSG00205002889	pseudogene	Chr8:42814375-42815001 (-)
JF1/MsJ	ENSUMUG00000005788	pseudogene	Chr8:51173049-51173698 (-)
LP/J	ENSMUSG00230017460	pseudogene	Chr8:53223396-53224022 (-)
NOD/ShiLtJ	ENSMUSG00190006741	pseudogene	Chr8:43719589-43720215 (-)
NZO/HlLtJ	ENSMUSG00225012065	pseudogene	Chr8:56812031-56812657 (-)
PWK/PhJ	ENSLUMG00010010113	pseudogene	Chr8:43459973-43460622 (-)
SPRET/EiJ	ENSMSPG00010006374	pseudogene	Chr8:44337860-44338498 (-)
WSB/EiJ	ENSIUOG00005002669	pseudogene	Chr8:44540557-44541203 (-)

Homology

• Gene Tree
  Gm2607
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm2607
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000110544 (Evidence)
• NCBI Gene
  100040113

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110544	Ensembl Gene Model | MGI Sequence Detail	627	C57BL/6J
transcript	ENSMUST00000212389	Ensembl | MGI Sequence Detail	627	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm2607:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr81266	Chr8:48523769-48523770 (-)	-107 bp