Gm2553 Pseudogene Detail

Summary

• Symbol
  Gm2553
• Name
  predicted gene 2553

• Feature Type
  pseudogene
• IDs
  MGI:3780721
  NCBI Gene: 100040009
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:63708475-63709079 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 34.31 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780721	pseudogene	Chr9:63708475-63709079 (-)
129S1/SvImJ	ENSMUSG00200043494	pseudogene	Chr9:60811039-60811642 (-)
A/J	ENSMUSG00195042118	pseudogene	Chr9:60520118-60520721 (-)
AKR/J	ENSMUSG00220042258	pseudogene	Chr9:60670498-60671102 (-)
BALB/cJ	ENSMUSG00180020698	pseudogene	Chr9:60658327-60658931 (-)
C3H/HeJ	ENSMUSG00175022361	pseudogene	Chr9:60653942-60654545 (-)
C57BL/6NJ	ENSMUSG00215032985	pseudogene	Chr9:60645469-60646073 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021620	pseudogene	Chr9:60562983-60563576 (-)
CBA/J	ENSMUSG00210014733	pseudogene	Chr9:60741317-60741921 (-)
DBA/2J	ENSMUSG00185044424	pseudogene	Chr9:60764524-60765128 (-)
FVB/NJ	ENSMUSG00205034299	pseudogene	Chr9:61090790-61091393 (-)
JF1/MsJ	ENSUMUG00000050261	pseudogene	Chr9:60821869-60822472 (-)
LP/J	ENSMUSG00230039944	pseudogene	Chr9:61010231-61010834 (-)
NOD/ShiLtJ	ENSMUSG00190023141	pseudogene	Chr9:60849760-60850364 (-)
NZO/HlLtJ	ENSMUSG00225046764	pseudogene	Chr9:61075013-61075616 (-)
PWK/PhJ	ENSLUMG00010027338	pseudogene	Chr9:60793319-60793922 (-)
SPRET/EiJ	ENSMSPG00010022346	pseudogene	Chr9:61850047-61850335 (-)
WSB/EiJ	ENSIUOG00005041130	pseudogene	Chr9:60256623-60257227 (-)

Homology

• Gene Tree
  Gm2553
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm2553
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111137 (Evidence)
• NCBI Gene
  100040009

Representative Sequences			Length	Strain/Species
genomic	100040009	NCBI Gene Model | MGI Sequence Detail	605	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;