Gm2541 Pseudogene Detail

Summary

• Symbol
  Gm2541
• Name
  predicted pseudogene 2541

• Feature Type
  pseudogene
• IDs
  MGI:3780709
  NCBI Gene: 100039994
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:85350124-85350831 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 47.71 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780709	pseudogene	Chr16:85350121-85350831 (-)
129S1/SvImJ	ENSMUSG00200038591	pseudogene	Chr16:82248587-82249297 (-)
A/J	ENSMUSG00195030335	pseudogene	Chr16:82047365-82048075 (-)
AKR/J	ENSMUSG00220016216	pseudogene	Chr16:82196521-82197231 (-)
BALB/cJ	ENSMUSG00180015196	pseudogene	Chr16:82093253-82093965 (-)
C3H/HeJ	ENSMUSG00175016312	pseudogene	Chr16:82407301-82408011 (-)
C57BL/6NJ	ENSMUSG00215035516	pseudogene	Chr16:82214795-82215505 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210044543	pseudogene	Chr16:82319150-82319862 (-)
DBA/2J	ENSMUSG00185035500	pseudogene	Chr16:82259171-82259881 (-)
FVB/NJ	ENSMUSG00205028038	pseudogene	Chr16:82076408-82077118 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230035928	pseudogene	Chr16:84809783-84810493 (-)
NOD/ShiLtJ	ENSMUSG00190027912	pseudogene	Chr16:82264486-82265196 (-)
NZO/HlLtJ	ENSMUSG00225031220	pseudogene	Chr16:87949748-87950460 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005021964	pseudogene	Chr16:82218435-82219145 (-)

Homology

• Gene Tree
  Gm2541
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  1
• Genomic Mutations
  2 involving Gm2541
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000089698 (Evidence)
• NCBI Gene
  100039994

Representative Sequences			Length	Strain/Species
genomic	100039994	NCBI Gene Model | MGI Sequence Detail	708	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:117029 Davisson M, et al., Impact of trisomy on fertility and meiosis in male mice. Hum Reprod. 2007 Feb;22(2):468-76
• Latest
  J:223383 Arbogast T, et al., Deletion of the App-Runx1 region in mice models human partial monosomy 21. Dis Model Mech. 2015 Jun;8(6):623-34