Gm2517 Pseudogene Detail

Summary

• Symbol
  Gm2517
• Name
  predicted gene 2517

• Feature Type
  pseudogene
• IDs
  MGI:3780684
  NCBI Gene: 100039955
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:15335563-15335910 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 4.88 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780684	pseudogene	Chr9:15335002-15336004 (-)
129S1/SvImJ	ENSMUSG00200050043	pseudogene	Chr9:12237429-12237776 (-)
A/J	ENSMUSG00195039477	pseudogene	Chr9:12122712-12123059 (-)
AKR/J	ENSMUSG00220035545	pseudogene	Chr9:12100470-12100817 (-)
BALB/cJ	ENSMUSG00180042793	pseudogene	Chr9:12247045-12247392 (-)
C3H/HeJ	ENSMUSG00175045525	pseudogene	Chr9:12193912-12194259 (-)
C57BL/6NJ	ENSMUSG00215038961	pseudogene	Chr9:12188528-12188875 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035828	pseudogene	Chr9:12232756-12233102 (-)
CBA/J	ENSMUSG00210045071	pseudogene	Chr9:12225105-12225452 (-)
DBA/2J	ENSMUSG00185026635	pseudogene	Chr9:12313614-12313961 (-)
FVB/NJ	ENSMUSG00205043067	pseudogene	Chr9:12295699-12296046 (-)
JF1/MsJ	ENSUMUG00000049945	pseudogene	Chr9:12317553-12317900 (-)
LP/J	ENSMUSG00230044276	pseudogene	Chr9:12735481-12735828 (-)
NOD/ShiLtJ	ENSMUSG00190040330	pseudogene	Chr9:12224085-12224432 (-)
NZO/HlLtJ	ENSMUSG00225051156	pseudogene	Chr9:12633066-12633413 (-)
PWK/PhJ	ENSLUMG00010047198	pseudogene	Chr9:12250073-12250420 (-)
SPRET/EiJ	ENSMSPG00010025822	pseudogene	Chr9:12441793-12442140 (-)
WSB/EiJ	ENSIUOG00005045339	pseudogene	Chr9:11900598-11900945 (-)

Homology

• Gene Tree
  Gm2517
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111823 (Evidence)
• NCBI Gene
  100039955

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111823	Ensembl Gene Model | MGI Sequence Detail	348	C57BL/6J
transcript	ENSMUST00000215651	Ensembl | MGI Sequence Detail	348	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;