Gm2447 Gene Detail

Summary

• Symbol
  Gm2447
• Name
  predicted gene 2447

• Feature Type
  lncRNA gene
• IDs
  MGI:3780614
  NCBI Gene: 329639
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:52647145-52684075 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 24.10 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1312 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780614	lncRNA gene	Chr3:52571008-52685745 (+)
129S1/SvImJ	ENSMUSG00200000414	lncRNA gene	Chr3:49474761-49536437 (+)
A/J	ENSMUSG00195000833	lncRNA gene	Chr3:49436969-49473906 (+)
AKR/J	ENSMUSG00220016006	lncRNA gene	Chr3:49491758-49543040 (+)
BALB/cJ	ENSMUSG00180000416	lncRNA gene	Chr3:49515738-49567018 (+)
C3H/HeJ	ENSMUSG00175002109	lncRNA gene	Chr3:49349251-49400529 (+)
C57BL/6NJ	ENSMUSG00215000659	lncRNA gene	Chr3:49782614-49819557 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005627	lincRNA gene	Chr3:46378614-46415493 (+)
CAST/EiJ	ENSTCUG00005010238	lncRNA gene	Chr3:49146137-49183216 (+)
CBA/J	ENSMUSG00210000827	lncRNA gene	Chr3:49461397-49512680 (+)
DBA/2J	ENSMUSG00185000255	lncRNA gene	Chr3:49698100-49735042 (+)
FVB/NJ	ENSMUSG00205009739	lncRNA gene	Chr3:48678395-48715336 (+)
JF1/MsJ	ENSUMUG00000026369	lncRNA gene	Chr3:49112832-49149757 (+)
LP/J	ENSMUSG00230005012	lncRNA gene	Chr3:51647516-51698794 (+)
NOD/ShiLtJ	ENSMUSG00190000400	lncRNA gene	Chr3:49825083-49876362 (+)
NZO/HlLtJ	ENSMUSG00225017471	lncRNA gene	Chr3:54263620-54314898 (+)
PWK/PhJ	ENSLUMG00010010403	lncRNA gene	Chr3:49273349-49309004 (+)
SPRET/EiJ	ENSMSPG00010007275	lncRNA gene	Chr3:49949064-49987122 (+)
WSB/EiJ	ENSIUOG00005000606	lncRNA gene	Chr3:49611992-49648972 (+)

Homology

• Gene Tree
  Gm2447
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm2447
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1

• Ensembl
  ENSMUSG00000102785 (Evidence)
• NCBI Gene
  329639

Representative Sequences			Length	Strain/Species
genomic	329639	NCBI Gene Model | MGI Sequence Detail	36931	C57BL/6J
transcript	NR_038079	RefSeq | MGI Sequence Detail	1805	C57BL/6

Molecular
Reagents

• All nucleic 8

  cDNA 8

References

• Summaries
  All 17

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm2447:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29101	Chr3:52647147-52647157 (+)	7 bp