Gm2436 Pseudogene Detail

Summary

• Symbol
  Gm2436
• Name
  predicted gene 2436

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3780603
  NCBI Gene: 100039815
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:55188894-55201681 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 23.87 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780603	pseudogene	Chr12:55187857-55201703 (-)
129S1/SvImJ	ENSMUSG00200030892	pseudogene	Chr12:47172523-47185310 (-)
A/J	ENSMUSG00195019353	pseudogene	Chr12:49737976-49750763 (-)
AKR/J	ENSMUSG00220026881	pseudogene	Chr12:47756331-47769118 (-)
BALB/cJ	ENSMUSG00180006072	pseudogene	Chr12:48758930-48771717 (-)
C3H/HeJ	ENSMUSG00175016854	pseudogene	Chr12:51800040-51812827 (-)
C57BL/6NJ	ENSMUSG00215019511	pseudogene	Chr12:48106774-48119561 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009297	pseudogene	Chr12:48242972-48251180 (-)
CBA/J	ENSMUSG00210009984	pseudogene	Chr12:48274334-48287121 (-)
DBA/2J	ENSMUSG00185001261	pseudogene	Chr12:50219759-50232546 (-)
FVB/NJ	ENSMUSG00205015777	pseudogene	Chr12:48060911-48073696 (-)
JF1/MsJ	ENSUMUG00000008841	pseudogene	Chr12:54377903-54386882 (-)
LP/J	ENSMUSG00230015939	pseudogene	Chr12:57249508-57262295 (-)
NOD/ShiLtJ	ENSMUSG00190016150	pseudogene	Chr12:47268155-47280942 (-)
NZO/HlLtJ	ENSMUSG00225040966	pseudogene	Chr12:59393433-59406220 (-)
PWK/PhJ	ENSLUMG00010016589	pseudogene	Chr12:48415303-48424271 (-)
SPRET/EiJ	ENSMSPG00010016407	pseudogene	Chr12:49838080-49863878 (-)
WSB/EiJ	ENSIUOG00005003599	pseudogene	Chr12:48107304-48120087 (-)

Homology

• Gene Tree
  Gm2436
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm2436
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000112022 (Evidence)
• NCBI Gene
  100039815

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112022	Ensembl Gene Model | MGI Sequence Detail	12788	C57BL/6J
transcript	ENSMUST00000219562	Ensembl | MGI Sequence Detail	850	Not Applicable
polypeptide	XP_030102892	RefSeq | MGI Sequence Detail	297	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;