Gm2427 Pseudogene Detail

Summary

• Symbol
  Gm2427
• Name
  predicted gene 2427

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3780593
  NCBI Gene: 100039794
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:85428811-85442325 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 43.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780593	pseudogene	Chr1:85425706-85442325 (+)
129S1/SvImJ	ENSMUSG00200039193	pseudogene	Chr1:82640844-82661807 (-)
129S1/SvImJ	ENSMUSG00200038906	pseudogene	Chr1:82771736-82785249 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	ENSMUSG00180018338	pseudogene	Chr1:82515781-82529297 (+)
C3H/HeJ	ENSMUSG00175001418	pseudogene	Chr1:82519392-82533635 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185016755	pseudogene	Chr1:86713218-86726734 (+)
DBA/2J	ENSMUSG00185018148	pseudogene	Chr1:84070826-84275054 (+)
DBA/2J	ENSMUSG00185018059	pseudogene	Chr1:86381129-86559897 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000027508	pseudogene	Chr1:85283010-85297151 (+)
JF1/MsJ	ENSUMUG00000020793	pseudogene	Chr1:85382569-85400200 (-)
JF1/MsJ	ENSUMUG00000020935	pseudogene	Chr1:84271668-84273814 (+)
JF1/MsJ	ENSUMUG00000020958	pseudogene	Chr1:84585006-84603402 (+)
JF1/MsJ	ENSUMUG00000020729	pseudogene	Chr1:83013311-83029626 (-)
JF1/MsJ	ENSUMUG00000021030	pseudogene	Chr1:84842995-84857261 (+)
JF1/MsJ	ENSUMUG00000020862	pseudogene	Chr1:83348944-83362728 (+)
LP/J	ENSMUSG00230021818	pseudogene	Chr1:85991544-86005058 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225004561	pseudogene	Chr1:89894333-89907847 (+)
NZO/HlLtJ	ENSMUSG00225005229	pseudogene	Chr1:87252183-87456396 (+)
NZO/HlLtJ	ENSMUSG00225005202	pseudogene	Chr1:89562266-89741031 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm2427
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm2427
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000101751 (Evidence)
• NCBI Gene
  100039794

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101751	Ensembl Gene Model | MGI Sequence Detail	13515	C57BL/6J
transcript	ENSMUST00000189121	Ensembl | MGI Sequence Detail	881	Not Applicable
polypeptide	XP_036011223	RefSeq | MGI Sequence Detail	321	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45