Gm2398 Pseudogene Detail

Summary

• Symbol
  Gm2398
• Name
  predicted gene 2398

• Feature Type
  pseudogene
• IDs
  MGI:3780566
  NCBI Gene: 100039743
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:97629706-97630588 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 47.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  182 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780566	pseudogene	Chr12:97629689-97630719 (+)
129S1/SvImJ	ENSMUSG00200017935	pseudogene	Chr12:89424714-89425566 (+)
A/J	ENSMUSG00195022279	pseudogene	Chr12:91969898-91970780 (+)
AKR/J	ENSMUSG00220018208	pseudogene	Chr12:89860305-89861187 (+)
BALB/cJ	ENSMUSG00180015834	pseudogene	Chr12:91113167-91114049 (+)
C3H/HeJ	ENSMUSG00175036274	pseudogene	Chr12:93752372-93753254 (+)
C57BL/6NJ	ENSMUSG00215017810	pseudogene	Chr12:90413276-90414160 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006065	pseudogene	Chr12:90072182-90073015 (+)
CBA/J	ENSMUSG00210019134	pseudogene	Chr12:90786998-90787850 (+)
DBA/2J	ENSMUSG00185046235	pseudogene	Chr12:92562009-92562893 (+)
FVB/NJ	ENSMUSG00205000692	pseudogene	Chr12:89949778-89950630 (+)
JF1/MsJ	ENSUMUG00000025387	pseudogene	Chr12:97259455-97260293 (+)
LP/J	ENSMUSG00230005005	pseudogene	Chr12:99689920-99690772 (+)
NOD/ShiLtJ	ENSMUSG00190005452	pseudogene	Chr12:95366334-95367218 (-)
NZO/HlLtJ	ENSMUSG00225033874	pseudogene	Chr12:101400533-101401445 (+)
PWK/PhJ	ENSLUMG00010003598	pseudogene	Chr12:90757299-90758167 (+)
SPRET/EiJ	ENSMSPG00010020125	pseudogene	Chr12:93209477-93210371 (+)
WSB/EiJ	ENSIUOG00005002171	pseudogene	Chr12:89777213-89778065 (+)

Homology

• Gene Tree
  Gm2398
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm2398
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000112584 (Evidence)
• NCBI Gene
  100039743

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000112584	Ensembl Gene Model | MGI Sequence Detail	883	C57BL/6J
transcript	ENSMUST00000218347	Ensembl | MGI Sequence Detail	883	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;