Gm2396 Gene Detail

Summary

• Symbol
  Gm2396
• Name
  predicted gene 2396

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3780564
  NCBI Gene: 105245043
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:88756786-88835615 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 47.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  434 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780564	protein coding gene	Chr9:88756786-88838256 (-)
129S1/SvImJ	ENSMUSG00200005862	lncRNA gene	Chr9:86081830-86164717 (-)
A/J	ENSMUSG00195007706	lncRNA gene	Chr9:85393758-85396483 (+)
AKR/J	ENSMUSG00220020742	lncRNA gene	Chr9:85781606-85839951 (-)
AKR/J	ENSMUSG00220021088	lncRNA gene	Chr9:85849884-85855526 (-)
BALB/cJ	ENSMUSG00180007518	lncRNA gene	Chr9:85725370-85783182 (-)
C3H/HeJ	ENSMUSG00175004916	lncRNA gene	Chr9:85784910-85843275 (-)
C57BL/6NJ	ENSMUSG00215011732	lncRNA gene	Chr9:85768585-85826940 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005004506	lncRNA gene	Chr9:85866570-85928046 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185001980	lncRNA gene	Chr9:85783409-85839226 (-)
DBA/2J	ENSMUSG00185001974	lncRNA gene	Chr9:85669876-85723682 (+)
FVB/NJ	ENSMUSG00205005389	lncRNA gene	Chr9:86226671-86254552 (-)
JF1/MsJ	ENSUMUG00000032645	lncRNA gene	Chr9:85587626-85639159 (+)
LP/J	ENSMUSG00230010522	lncRNA gene	Chr9:85986028-86044399 (-)
LP/J	ENSMUSG00230010619	lncRNA gene	Chr9:86275924-86281601 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225016451	lncRNA gene	Chr9:86084341-86149756 (-)
PWK/PhJ	ENSLUMG00010002951	lncRNA gene	Chr9:85492597-85544035 (+)
SPRET/EiJ	ENSMSPG00010002749	lncRNA gene	Chr9:87397013-87432310 (-)
WSB/EiJ	ENSIUOG00005048668	lncRNA gene	Chr9:110320527-110370803 (-)

Homology

• Gene Tree
  Gm2396
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm2396
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  22

• Ensembl
  ENSMUSG00000099930 (Evidence)
• NCBI Gene
  105245043

Representative Sequences			Length	Strain/Species
genomic	105245043	NCBI Gene Model | MGI Sequence Detail	78830	C57BL/6J
transcript	NM_001378764	RefSeq | MGI Sequence Detail	1881	C57BL/6
polypeptide	NP_001365693	RefSeq | MGI Sequence Detail	534	C57BL/6

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;