Gm2390 Pseudogene Detail

Summary

• Symbol
  Gm2390
• Name
  predicted gene 2390

• Feature Type
  pseudogene
• IDs
  MGI:3780558
  NCBI Gene: 100039725
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:84730701-84731597 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 57.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780558	pseudogene	Chr18:84730656-84731789 (+)
129S1/SvImJ	ENSMUSG00200015408	pseudogene	Chr18:81962488-81963384 (+)
A/J	ENSMUSG00195001331	pseudogene	Chr18:82041162-82042058 (+)
AKR/J	ENSMUSG00220016711	pseudogene	Chr18:81956894-81957790 (+)
BALB/cJ	ENSMUSG00180002744	pseudogene	Chr18:82607917-82608813 (+)
C3H/HeJ	ENSMUSG00175019025	pseudogene	Chr18:82154545-82155441 (+)
C57BL/6NJ	ENSMUSG00215004375	pseudogene	Chr18:81524831-81525727 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005536	pseudogene	Chr18:81077879-81078775 (+)
CBA/J	ENSMUSG00210017935	pseudogene	Chr18:82101179-82102075 (+)
DBA/2J	ENSMUSG00185004394	pseudogene	Chr18:82003659-82004555 (+)
FVB/NJ	ENSMUSG00205014063	pseudogene	Chr18:81408104-81409000 (+)
JF1/MsJ	ENSUMUG00000018510	pseudogene	Chr18:81851759-81852656 (+)
LP/J	ENSMUSG00230018576	pseudogene	Chr18:84051317-84052213 (+)
NOD/ShiLtJ	ENSMUSG00190003457	pseudogene	Chr18:81825743-81826639 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010004050	pseudogene	Chr18:82266958-82267855 (+)
SPRET/EiJ	ENSMSPG00010001303	pseudogene	Chr18:82637027-82637924 (+)
WSB/EiJ	ENSIUOG00005016238	pseudogene	Chr18:81447517-81448413 (+)

Homology

• Gene Tree
  Gm2390
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm2390
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000118152 (Evidence)
• NCBI Gene
  100039725

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118152	Ensembl Gene Model | MGI Sequence Detail	897	C57BL/6J
transcript	ENSMUST00000237194	Ensembl | MGI Sequence Detail	897	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:175597 Overbeek PA, Direct Data Submission for Overbeek Lentiviral Transgenic Lines. MGI Direct Data Submission. 2011;

TSS for Gm2390:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152212	Chr18:84730657-84730668 (+)	-38 bp