Gm2233 Gene Detail

Summary

• Symbol
  Gm2233
• Name
  predicted gene 2233

• Feature Type
  lncRNA gene
• IDs
  MGI:3780403
  NCBI Gene: 100039432
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:44102355-44106175 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  178 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780403	lncRNA gene	Chr13:44102314-44106175 (+)
129S1/SvImJ	ENSMUSG00200036343	lncRNA gene	Chr13:41367741-41371576 (+)
A/J	ENSMUSG00195030453	lncRNA gene	Chr13:40427689-40431524 (+)
AKR/J	ENSMUSG00220009786	lncRNA gene	Chr13:40217311-40221136 (+)
BALB/cJ	ENSMUSG00180009215	lncRNA gene	Chr13:40734351-40738186 (+)
C3H/HeJ	ENSMUSG00175031197	lncRNA gene	Chr13:40698753-40702588 (+)
C57BL/6NJ	ENSMUSG00215006534	lncRNA gene	Chr13:40845230-40849050 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033035	lncRNA gene	Chr13:40756676-40760563 (+)
CBA/J	ENSMUSG00210027717	lncRNA gene	Chr13:40704332-40708167 (+)
DBA/2J	ENSMUSG00185032503	lncRNA gene	Chr13:41500452-41504267 (+)
FVB/NJ	ENSMUSG00205011966	lncRNA gene	Chr13:40456207-40460037 (+)
JF1/MsJ	ENSUMUG00000017010	lncRNA gene	Chr13:41046945-41050906 (+)
LP/J	ENSMUSG00230030100	lncRNA gene	Chr13:50836680-50840515 (+)
NOD/ShiLtJ	ENSMUSG00190013077	lncRNA gene	Chr13:40899368-40903188 (+)
NZO/HlLtJ	ENSMUSG00225036162	lncRNA gene	Chr13:44605614-44609444 (+)
PWK/PhJ	ENSLUMG00010032406	lncRNA gene	Chr13:39891929-39895764 (+)
SPRET/EiJ	ENSMSPG00010010996	lncRNA gene	Chr13:39957490-39961286 (+)
WSB/EiJ	ENSIUOG00005029569	lncRNA gene	Chr13:40040593-40044469 (+)

Homology

• Gene Tree
  Gm2233
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000113671 (Evidence)
• NCBI Gene
  100039432

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113671	Ensembl Gene Model | MGI Sequence Detail	3821	C57BL/6J
transcript	ENSMUST00000222566	Ensembl | MGI Sequence Detail	1916	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm2233:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr119522	Chr13:44102313-44102316 (+)	-40 bp