Gm2176 Pseudogene Detail

Summary

• Symbol
  Gm2176
• Name
  predicted gene 2176
• Synonyms
  A430076E10Rik

• Feature Type
  pseudogene
• IDs
  MGI:3780346
  NCBI Gene: 100039348
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:80586468-80587230 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 53.57 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780346	pseudogene	Chr18:80585107-80587761 (-)
129S1/SvImJ	ENSMUSG00200029922	pseudogene	Chr18:77789749-77792406 (-)
A/J	ENSMUSG00195005244	pseudogene	Chr18:77886734-77889388 (-)
AKR/J	ENSMUSG00220017464	pseudogene	Chr18:77817247-77819876 (-)
BALB/cJ	ENSMUSG00180013634	pseudogene	Chr18:78456951-78459605 (-)
C3H/HeJ	ENSMUSG00175013569	pseudogene	Chr18:78002421-78005075 (-)
C57BL/6NJ	ENSMUSG00215031282	pseudogene	Chr18:77364655-77367309 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029904	pseudogene	Chr18:76912789-76915418 (-)
CBA/J	ENSMUSG00210037820	pseudogene	Chr18:77952994-77955648 (-)
DBA/2J	ENSMUSG00185011614	pseudogene	Chr18:77858242-77860896 (-)
FVB/NJ	ENSMUSG00205018805	pseudogene	Chr18:77267165-77269822 (-)
JF1/MsJ	ENSUMUG00000038353	pseudogene	Chr18:77755580-77758209 (-)
LP/J	ENSMUSG00230013936	pseudogene	Chr18:79896013-79898670 (-)
NOD/ShiLtJ	ENSMUSG00190024668	pseudogene	Chr18:77659038-77661692 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010007244	pseudogene	Chr18:78144979-78147608 (-)
SPRET/EiJ	ENSMSPG00010010023	pseudogene	Chr18:78508974-78511629 (-)
WSB/EiJ	ENSIUOG00005008644	pseudogene	Chr18:77317909-77320563 (-)

Homology

• Gene Tree
  Gm2176
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm2176
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000118319 (Evidence)
• NCBI Gene
  100039348

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118319	Ensembl Gene Model | MGI Sequence Detail	763	C57BL/6J
transcript	ENSMUST00000237325	Ensembl | MGI Sequence Detail	763	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

Other
Accession IDs

MGI:3045375

References

• Summaries
  All 10

  Phenotypes 1
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582