Gm2099 Pseudogene Detail

Summary

• Symbol
  Gm2099
• Name
  predicted gene 2099

• Feature Type
  pseudogene
• IDs
  MGI:3780266
  NCBI Gene: 100039203
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:87954964-87955375 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  47 from dbSNP Build 142
• Strain Annotations
  25

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780266	pseudogene	Chr12:87954964-87955375 (+)
129S1/SvImJ	ENSMUSG00200051883	pseudogene	Chr12:79726915-79730250 (-)
129S1/SvImJ	ENSMUSG00200051410	pseudogene	Chr12:79890699-79894039 (-)
129S1/SvImJ	ENSMUSG00200051877	pseudogene	Chr12:79891053-79891464 (-)
A/J	ENSMUSG00195036457	pseudogene	Chr12:82386284-82389619 (-)
A/J	ENSMUSG00195033929	pseudogene	Chr12:82550100-82553440 (-)
A/J	ENSMUSG00195035988	pseudogene	Chr12:82550454-82550865 (-)
AKR/J	ENSMUSG00220050294	pseudogene	Chr12:80031437-80034777 (+)
AKR/J	ENSMUSG00220050053	pseudogene	Chr12:80034012-80034423 (+)
BALB/cJ	ENSMUSG00180016282	pseudogene	Chr12:81523878-81527217 (+)
C3H/HeJ	ENSMUSG00175039845	pseudogene	Chr12:84433989-84437327 (+)
C57BL/6NJ	ENSMUSG00215046486	pseudogene	Chr12:80707900-80711241 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035530	pseudogene	Chr12:80545861-80549200 (+)
CBA/J	ENSMUSG00210048428	pseudogene	Chr12:81293602-81296942 (-)
CBA/J	ENSMUSG00210047525	pseudogene	Chr12:80852444-80855782 (+)
CBA/J	ENSMUSG00210048412	pseudogene	Chr12:81129810-81133145 (-)
DBA/2J	ENSMUSG00185003120	pseudogene	Chr12:82704361-82707699 (+)
DBA/2J	ENSMUSG00185003137	pseudogene	Chr12:83145477-83148817 (-)
DBA/2J	ENSMUSG00185003132	pseudogene	Chr12:82981697-82985032 (-)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230047658	pseudogene	Chr12:90207552-90210892 (-)
LP/J	ENSMUSG00230047753	pseudogene	Chr12:90043771-90047106 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225052889	pseudogene	Chr12:91816831-91820171 (+)
PWK/PhJ	ENSLUMG00010003620	pseudogene	Chr12:81058027-81061366 (-)
PWK/PhJ	ENSLUMG00010003842	pseudogene	Chr12:81301808-81305146 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005046879	pseudogene	Chr12:80572788-80576127 (+)

Homology

• Gene Tree
  Gm2099
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000113854 (Evidence)
• NCBI Gene
  100039203

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113854	Ensembl Gene Model | MGI Sequence Detail	412	C57BL/6J
transcript	ENSMUST00000220979	Ensembl | MGI Sequence Detail	412	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;