Gm2020 Pseudogene Detail

Summary

• Symbol
  Gm2020
• Name
  predicted gene 2020

• Feature Type
  pseudogene
• IDs
  MGI:3780189
  NCBI Gene: 100534288
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:175638506-175639784 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 98.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780189	pseudogene	Chr2:175636757-175639784 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	ENSMUSG00220038349	pseudogene	Chr2:171445716-171447668 (+)
BALB/cJ	ENSMUSG00180000774	pseudogene	Chr2:171679051-171680998 (-)
C3H/HeJ	ENSMUSG00175041570	pseudogene	Chr2:172317355-172319312 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009000	pseudogene	Chr2:170741369-170743358 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185027208	pseudogene	Chr2:172167045-172168999 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000036585	pseudogene	Chr2:172628656-172630622 (-)
JF1/MsJ	ENSUMUG00000036669	pseudogene	Chr2:172433203-172435555 (-)
LP/J	ENSMUSG00230027834	pseudogene	Chr2:174072334-174074259 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225004202	pseudogene	Chr2:182162013-182163938 (-)
PWK/PhJ	ENSLUMG00010038761	pseudogene	Chr2:172041361-172042105 (+)
SPRET/EiJ	ENSMSPG00010004314	pseudogene	Chr2:174507927-174508669 (+)
WSB/EiJ	ENSIUOG00005026939	pseudogene	Chr2:171465552-171467505 (+)

Homology

• Gene Tree
  Gm2020
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  8
• Endonuclease-mediated
  8
• Genomic Mutations
  8 involving Gm2020
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000086941 (Evidence)
• NCBI Gene
  100534288

Representative Sequences			Length	Strain/Species
genomic	100534288	NCBI Gene Model | MGI Sequence Detail	1279	C57BL/6J

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:291191 Wolf G, et al., KRAB-zinc finger protein gene expansion in response to active retrotransposons in the murine lineage. Elife. 2020 Jun 1;9:e56337
• Latest
  J:370032 Takeda I, et al., Gene trapping reveals a new transcriptionally active genome element: The chromosome-specific clustered trap region. Genes Cells. 2021 Nov;26(11):874-890