Gm2011 Pseudogene Detail

Summary

• Symbol
  Gm2011
• Name
  predicted gene 2011

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3780180
  NCBI Gene: 100039027
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:40801391-40822276 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 19.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  648 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780180	pseudogene	Chr3:40801255-40829823 (+)
129S1/SvImJ	ENSMUSG00200006806	pseudogene	Chr3:37544853-37573432 (+)
A/J	ENSMUSG00195001518	pseudogene	Chr3:37529242-37557795 (+)
AKR/J	ENSMUSG00220000944	pseudogene	Chr3:37611099-37639679 (+)
BALB/cJ	ENSMUSG00180002900	pseudogene	Chr3:37656328-37684906 (+)
C3H/HeJ	ENSMUSG00175003932	pseudogene	Chr3:37527118-37555669 (+)
C57BL/6NJ	ENSMUSG00215001646	pseudogene	Chr3:37938844-37967410 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036964	pseudogene	Chr3:35440197-35441471 (+)
CAST/EiJ	ENSTCUG00005001227	pseudogene	Chr3:37388308-37412969 (+)
CBA/J	ENSMUSG00210002117	pseudogene	Chr3:37622539-37651090 (+)
DBA/2J	ENSMUSG00185001904	pseudogene	Chr3:37819102-37847676 (+)
FVB/NJ	ENSMUSG00205000942	pseudogene	Chr3:36938358-36966892 (+)
JF1/MsJ	ENSUMUG00000001014	pseudogene	Chr3:37313702-37342569 (+)
LP/J	ENSMUSG00230023965	pseudogene	Chr3:39785841-39814409 (+)
NOD/ShiLtJ	ENSMUSG00190001809	pseudogene	Chr3:37876380-37904946 (+)
NZO/HlLtJ	ENSMUSG00225000898	pseudogene	Chr3:42406773-42435341 (+)
PWK/PhJ	ENSLUMG00010000926	pseudogene	Chr3:37357707-37386565 (+)
SPRET/EiJ	ENSMSPG00010000898	pseudogene	Chr3:37830277-37858701 (+)
WSB/EiJ	ENSIUOG00005014438	pseudogene	Chr3:37795344-37823930 (+)

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm2011
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  5

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000107741 (Evidence), ENSMUSG00000121347 (Evidence)
• NCBI Gene
  100039027

Representative Sequences			Length	Strain/Species
genomic	100039027	NCBI Gene Model | MGI Sequence Detail	20886	C57BL/6J
transcript	NR_160689	RefSeq | MGI Sequence Detail	588	C57BL/6
polypeptide	Q9CV37	UniProt | EBI | MGI Sequence Detail	147	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR019149 Alpha/beta hydrolase domain-containing protein 18

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 2

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426