Trav9d-3 Gene Detail

Summary

• Symbol
  Trav9d-3
• Name
  T cell receptor alpha variable 9D-3
• Synonyms
  100038850, Gm10889

• Feature Type
  gene segment
• IDs
  MGI:3780142
  NCBI Gene: 100038850
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:53158135-53158567 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.15 cM

Strain
Comparison

• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780142	gene segment	Chr14:53157900-53158569 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	ENSMUSG00220032496	gene segment	Chr14:41659296-41659964 (-)
BALB/cJ	ENSMUSG00180053654	gene segment	Chr14:41813961-41814629 (+)
BALB/cJ	ENSMUSG00180053661	gene segment	Chr14:42281686-42282343 (+)
C3H/HeJ	ENSMUSG00175050955	gene segment	Chr14:43967358-43967794 (+)
C3H/HeJ	ENSMUSG00175050947	gene segment	Chr14:43496447-43497115 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010049799	gene segment	Chr14:41382748-41383416 (+)
PWK/PhJ	ENSLUMG00010049809	gene segment	Chr14:41850379-41851036 (+)
SPRET/EiJ	ENSMSPG00010047558	gene segment	Chr14:45239827-45240496 (+)
WSB/EiJ	ENSIUOG00005042905	gene segment	Chr14:41859701-41860370 (+)

Homology

• Human Ortholog
  TRAV8-3, T cell receptor alpha variable 8-3

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAV8-3, T cell receptor alpha variable 8-3
  
• Synonyms
  TCRAV1S4, TCRAV8S3, TRAV83
• Links
  HGNC:12148

  NCBI Gene ID: 28683

  UniProt: A0A0A6YYJ7

  
  
• Chr Location
  14q11.2; chr14:21852558-21853006 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trav9d-3 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: TRAV8-3
• Gene Tree
  Trav9d-3
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000095495 (Evidence)
• NCBI Gene
  100038850

Representative Sequences			Length	Strain/Species
genomic	100038850	NCBI Gene Model | MGI Sequence Detail	433	C57BL/6J
polypeptide	A0A075B695	UniProt | EBI | MGI Sequence Detail	113	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR051287 T cell receptor variable region

References

• Summaries
  All 8
• Earliest
  J:7627 Saito H, et al., A third rearranged and expressed gene in a clone of cytotoxic T lymphocytes. Nature. 1984 Nov 1-7;312(5989):36-40
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61