Gm1972 Pseudogene Detail

Summary

• Symbol
  Gm1972
• Name
  predicted pseudogene 1972

• Feature Type
  pseudogene
• IDs
  MGI:3780140
  NCBI Gene: 100038830
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:22116416-22130400 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 9.94 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  57 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780140	pseudogene	Chr10:22100179-22130400 (+)
129S1/SvImJ	ENSMUSG00200011104	pseudogene	Chr10:19101163-19122866 (+)
A/J	ENSMUSG00195007030	pseudogene	Chr10:19481111-19510610 (+)
AKR/J	ENSMUSG00220010300	pseudogene	Chr10:19022318-19055220 (+)
BALB/cJ	ENSMUSG00180016121	pseudogene	Chr10:19604402-19633906 (+)
C3H/HeJ	ENSMUSG00175021019	pseudogene	Chr10:19248639-19280941 (+)
C57BL/6NJ	ENSMUSG00215004005	pseudogene	Chr10:19071263-19100767 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210015790	pseudogene	Chr10:19185695-19215226 (+)
DBA/2J	ENSMUSG00185008260	pseudogene	Chr10:19170719-19200259 (+)
FVB/NJ	ENSMUSG00205020570	pseudogene	Chr10:19284557-19298648 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230011757	pseudogene	Chr10:21203562-21233065 (+)
NOD/ShiLtJ	ENSMUSG00190011299	pseudogene	Chr10:19536074-19565574 (+)
NZO/HlLtJ	ENSMUSG00225031601	pseudogene	Chr10:25459420-25488976 (+)
NZO/HlLtJ	ENSMUSG00225031644	pseudogene	Chr10:25319233-25358932 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010011449	pseudogene	Chr10:19613310-19613644 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm1972
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm1972
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000097053 (Evidence)
• NCBI Gene
  100038830

Representative Sequences			Length	Strain/Species
genomic	100038830	NCBI Gene Model | MGI Sequence Detail	13985	C57BL/6J

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87