Gm9703 Pseudogene Detail

Summary

• Symbol
  Gm9703
• Name
  predicted gene 9703

• Feature Type
  pseudogene
• IDs
  MGI:3780110
  NCBI Gene: 677010
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:27749041-27749386 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 14.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  39 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780110	pseudogene	Chr17:27749006-27749451 (+)
129S1/SvImJ	ENSMUSG00200054261	pseudogene	Chr17:23407162-23407507 (+)
A/J	ENSMUSG00195054421	pseudogene	Chr17:24225601-24225946 (+)
AKR/J	ENSMUSG00220054008	pseudogene	Chr17:23273220-23273565 (+)
BALB/cJ	ENSMUSG00180052164	pseudogene	Chr17:23703986-23704331 (+)
C3H/HeJ	ENSMUSG00175053760	pseudogene	Chr17:23261727-23262072 (+)
C57BL/6NJ	ENSMUSG00215054348	pseudogene	Chr17:23259658-23260003 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052064	pseudogene	Chr17:23985133-23985478 (+)
CBA/J	ENSMUSG00210051149	pseudogene	Chr17:23100486-23100831 (+)
DBA/2J	ENSMUSG00185054766	pseudogene	Chr17:25313788-25314133 (+)
FVB/NJ	ENSMUSG00205053488	pseudogene	Chr17:23576581-23576926 (+)
JF1/MsJ	ENSUMUG00000057835	pseudogene	Chr17:24768114-24768459 (+)
LP/J	ENSMUSG00230055215	pseudogene	Chr17:26833021-26833366 (+)
NOD/ShiLtJ	ENSMUSG00190054436	pseudogene	Chr17:23207141-23207486 (+)
NZO/HlLtJ	ENSMUSG00225054598	pseudogene	Chr17:28801080-28801425 (+)
PWK/PhJ	ENSLUMG00010053367	pseudogene	Chr17:22688843-22689188 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005051295	pseudogene	Chr17:23965559-23965904 (+)

Homology

• Gene Tree
  Gm9703
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm9703
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000082741 (Evidence)
• NCBI Gene
  677010

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082741	Ensembl Gene Model | MGI Sequence Detail	346	C57BL/6J
transcript	ENSMUST00000119573	Ensembl | MGI Sequence Detail	346	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for Gm9703:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143322	Chr17:27748963-27748968 (+)	-75 bp