Gm9633 Pseudogene Detail

Summary

• Symbol
  Gm9633
• Name
  predicted gene 9633

• Feature Type
  pseudogene
• IDs
  MGI:3780040
  NCBI Gene: 674926
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:118183856-118184480 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 66.73 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780040	pseudogene	Chr13:118183828-118184525 (+)
129S1/SvImJ	ENSMUSG00200003796	pseudogene	Chr13:112660757-112661381 (+)
A/J	ENSMUSG00195001016	pseudogene	Chr13:113169006-113169627 (+)
AKR/J	ENSMUSG00220012810	pseudogene	Chr13:111618889-111619510 (+)
BALB/cJ	ENSMUSG00180010931	pseudogene	Chr13:113770815-113771436 (+)
C3H/HeJ	ENSMUSG00175002347	pseudogene	Chr13:113837288-113837912 (+)
C57BL/6NJ	ENSMUSG00215000946	pseudogene	Chr13:113846839-113847463 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002657	pseudogene	Chr13:112911692-112912313 (+)
CBA/J	ENSMUSG00210017274	pseudogene	Chr13:113162373-113162997 (+)
DBA/2J	ENSMUSG00185029658	pseudogene	Chr13:116930177-116930801 (+)
FVB/NJ	ENSMUSG00205001344	pseudogene	Chr13:112609241-112609862 (+)
JF1/MsJ	ENSUMUG00000017705	pseudogene	Chr13:116376907-116377531 (+)
LP/J	ENSMUSG00230011802	pseudogene	Chr13:127128374-127128998 (+)
NOD/ShiLtJ	ENSMUSG00190009709	pseudogene	Chr13:113486791-113487412 (+)
NZO/HlLtJ	ENSMUSG00225031107	pseudogene	Chr13:119279489-119280113 (+)
PWK/PhJ	ENSLUMG00010008099	pseudogene	Chr13:112456749-112457372 (+)
SPRET/EiJ	ENSMSPG00010007078	pseudogene	Chr13:114327097-114327716 (+)
WSB/EiJ	ENSIUOG00005013173	pseudogene	Chr13:112633981-112634602 (+)

Homology

• Gene Tree
  Gm9633
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000114713 (Evidence)
• NCBI Gene
  674926

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114713	Ensembl Gene Model | MGI Sequence Detail	625	C57BL/6J
transcript	ENSMUST00000225643	Ensembl | MGI Sequence Detail	625	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm9633:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121240	Chr13:118183829-118183838 (+)	-22 bp