Gm9598 Pseudogene Detail

Summary

• Symbol
  Gm9598
• Name
  predicted gene 9598

• Feature Type
  pseudogene
• IDs
  MGI:3780006
  NCBI Gene: 673535
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:69877401-69878176 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 40.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  201 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3780006	pseudogene	Chr17:69877397-69878176 (+)
129S1/SvImJ	ENSMUSG00200039701	pseudogene	Chr17:65218632-65219409 (+)
A/J	ENSMUSG00195018516	pseudogene	Chr17:66559398-66560174 (+)
AKR/J	ENSMUSG00220018702	pseudogene	Chr17:65629107-65629885 (+)
BALB/cJ	ENSMUSG00180020204	pseudogene	Chr17:66295667-66296443 (+)
C3H/HeJ	ENSMUSG00175030975	pseudogene	Chr17:65610450-65611226 (+)
C57BL/6NJ	ENSMUSG00215034336	pseudogene	Chr17:65291550-65292324 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027516	pseudogene	Chr17:66159113-66159907 (+)
CBA/J	ENSMUSG00210030073	pseudogene	Chr17:65420896-65421671 (+)
DBA/2J	ENSMUSG00185022884	pseudogene	Chr17:68254115-68254890 (+)
FVB/NJ	ENSMUSG00205018620	pseudogene	Chr17:66061882-66062659 (+)
JF1/MsJ	ENSUMUG00000039165	pseudogene	Chr17:67915353-67916122 (+)
LP/J	ENSMUSG00230017094	pseudogene	Chr17:69234298-69235074 (+)
NOD/ShiLtJ	ENSMUSG00190036402	pseudogene	Chr17:65392291-65393067 (+)
NZO/HlLtJ	ENSMUSG00225029119	pseudogene	Chr17:71507960-71508735 (+)
PWK/PhJ	ENSLUMG00010030147	pseudogene	Chr17:65173576-65174343 (+)
SPRET/EiJ	ENSMSPG00010018540	pseudogene	Chr17:65527771-65528553 (+)
WSB/EiJ	ENSIUOG00005032366	pseudogene	Chr17:66272059-66272835 (+)

Homology

• Gene Tree
  Gm9598
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000117071 (Evidence)
• NCBI Gene
  673535

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000117071	Ensembl Gene Model | MGI Sequence Detail	776	C57BL/6J
transcript	ENSMUST00000233261	Ensembl | MGI Sequence Detail	776	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;