Gm9564 Gene Detail

Summary

• Symbol
  Gm9564
• Name
  predicted gene 9564

• Feature Type
  lncRNA gene
• IDs
  MGI:3779974
  NCBI Gene: 672498
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr8:112751566-112758964 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  329 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779974	lncRNA gene	Chr8:112751500-112758987 (-)
129S1/SvImJ	ENSMUSG00200014790	lncRNA gene	Chr8:107056286-107062196 (-)
A/J	ENSMUSG00195021602	lncRNA gene	Chr8:107368967-107374873 (-)
AKR/J	ENSMUSG00220015381	lncRNA gene	Chr8:107511406-107517314 (-)
BALB/cJ	ENSMUSG00180025949	lncRNA gene	Chr8:107380455-107388101 (-)
C3H/HeJ	ENSMUSG00175025557	lncRNA gene	Chr8:107441721-107447627 (-)
C57BL/6NJ	ENSMUSG00215037272	lncRNA gene	Chr8:107034200-107040108 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035275	lncRNA gene	Chr8:106793711-106799619 (-)
CBA/J	ENSMUSG00210037786	lncRNA gene	Chr8:107358443-107364353 (-)
DBA/2J	ENSMUSG00185018332	lncRNA gene	Chr8:113467408-113473316 (-)
FVB/NJ	ENSMUSG00205027532	lncRNA gene	Chr8:106370813-106376723 (-)
JF1/MsJ	ENSUMUG00000019897	lncRNA gene	Chr8:115800703-115806611 (-)
LP/J	ENSMUSG00230036291	lncRNA gene	Chr8:117147121-117153029 (-)
NOD/ShiLtJ	ENSMUSG00190030154	lncRNA gene	Chr8:107509267-107515177 (-)
NZO/HlLtJ	ENSMUSG00225023555	lncRNA gene	Chr8:120497828-120503736 (-)
PWK/PhJ	ENSLUMG00010028912	lncRNA gene	Chr8:107247417-107253527 (-)
SPRET/EiJ	ENSMSPG00010042737	lncRNA gene	Chr8:109392735-109398663 (-)
WSB/EiJ	ENSIUOG00005033658	lncRNA gene	Chr8:108206685-108214329 (-)

Homology

• Gene Tree
  Gm9564
  

Expression

• cDNA Data
  3

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  3

• Ensembl
  ENSMUSG00000121176 (Evidence)
• NCBI Gene
  672498

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121176	Ensembl Gene Model | MGI Sequence Detail	7399	C57BL/6J
transcript	ENSMUST00000381791	Ensembl | MGI Sequence Detail	1015	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 6
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm9564:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82992	Chr8:112758973-112758991 (-)	-18 bp
Tssr82991	Chr8:112757507-112757546 (-)	1,437 bp
Tssr82990	Chr8:112757446-112757477 (-)	1,502 bp