Gm9534 Pseudogene Detail

Summary

• Symbol
  Gm9534
• Name
  predicted gene 9534

• Feature Type
  pseudogene
• IDs
  MGI:3779943
  NCBI Gene: 671410
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:24069840-24081441 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 10.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  593 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779943	pseudogene	Chr5:24068246-24097645 (-)
129S1/SvImJ	ENSMUSG00200011317	pseudogene	Chr5:19685081-19696866 (-)
A/J	ENSMUSG00195040750	pseudogene	Chr5:19147357-19158959 (-)
AKR/J	ENSMUSG00220037949	pseudogene	Chr5:19237822-19249395 (-)
BALB/cJ	ENSMUSG00180025163	pseudogene	Chr5:19014984-19026561 (-)
C3H/HeJ	ENSMUSG00175049721	pseudogene	Chr5:20945563-20957165 (-)
C57BL/6NJ	ENSMUSG00215026347	pseudogene	Chr5:19581221-19592822 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003413	pseudogene	Chr5:19160628-19172203 (-)
CBA/J	ENSMUSG00210005435	pseudogene	Chr5:19984968-19996568 (-)
DBA/2J	ENSMUSG00185038163	pseudogene	Chr5:21526473-21538255 (-)
FVB/NJ	ENSMUSG00205036466	pseudogene	Chr5:18748377-18759956 (-)
JF1/MsJ	ENSUMUG00000007002	pseudogene	Chr5:26080597-26092198 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190005167	pseudogene	Chr5:19059329-19070902 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010036880	pseudogene	Chr5:19126132-19137734 (-)
SPRET/EiJ	ENSMSPG00010030114	pseudogene	Chr5:19994395-20005676 (-)
WSB/EiJ	ENSIUOG00005042975	pseudogene	Chr5:21871469-21883041 (-)

Homology

• Gene Tree
  Gm9534
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm9534
• Find Mice (IMSR)
  1 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000118576 (Evidence)
• NCBI Gene
  671410

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118576	Ensembl Gene Model | MGI Sequence Detail	11602	C57BL/6J
transcript	ENSMUST00000239129	Ensembl | MGI Sequence Detail	749	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm9534:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50297	Chr5:24076358-24076363 (-)	5,080 bp