Gm9525 Pseudogene Detail

Summary

• Symbol
  Gm9525
• Name
  predicted gene 9525

• Feature Type
  pseudogene
• IDs
  MGI:3779934
  NCBI Gene: 108168289
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:22353778-22354047 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 13.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  151 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779934	pseudogene	Chr16:22352961-22354144 (-)
129S1/SvImJ	ENSMUSG00200047324	pseudogene	Chr16:19353452-19353721 (-)
A/J	ENSMUSG00195037778	pseudogene	Chr16:18911764-18912033 (-)
AKR/J	ENSMUSG00220045788	pseudogene	Chr16:19231159-19231428 (-)
BALB/cJ	ENSMUSG00180042154	pseudogene	Chr16:19152366-19152635 (-)
C3H/HeJ	ENSMUSG00175050530	pseudogene	Chr16:19297300-19297569 (-)
C57BL/6NJ	ENSMUSG00215043094	pseudogene	Chr16:19024504-19024773 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046348	pseudogene	Chr16:19631017-19631286 (-)
CBA/J	ENSMUSG00210048173	pseudogene	Chr16:19319039-19319308 (-)
DBA/2J	ENSMUSG00185033477	pseudogene	Chr16:19257783-19258052 (-)
FVB/NJ	ENSMUSG00205047701	pseudogene	Chr16:19253687-19253956 (-)
JF1/MsJ	ENSUMUG00000054202	pseudogene	Chr16:19481845-19482114 (-)
LP/J	ENSMUSG00230034025	pseudogene	Chr16:21836901-21837170 (-)
NOD/ShiLtJ	ENSMUSG00190049967	pseudogene	Chr16:19399278-19399547 (-)
NZO/HlLtJ	ENSMUSG00225039214	pseudogene	Chr16:25087990-25088259 (-)
PWK/PhJ	ENSLUMG00010050252	pseudogene	Chr16:19313608-19313877 (-)
SPRET/EiJ	ENSMSPG00010048058	pseudogene	Chr16:19183907-19184167 (-)
WSB/EiJ	ENSIUOG00005044195	pseudogene	Chr16:19479008-19479277 (-)

Homology

• Gene Tree
  Gm9525
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000116580 (Evidence)
• NCBI Gene
  108168289

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000116580	Ensembl Gene Model | MGI Sequence Detail	270	C57BL/6J
transcript	ENSMUST00000231607	Ensembl | MGI Sequence Detail	270	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm9525:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140485	Chr16:22354141-22354147 (-)	-97 bp