Tgif1-ps Pseudogene Detail

Summary

• Symbol
  Tgif1-ps
• Name
  TGFB-induced factor homeobox 1, pseudogene
• Synonyms
  Gm9470

• Feature Type
  pseudogene
• IDs
  MGI:3779880
  NCBI Gene: 669823
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:60249779-60250514 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 29.17 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779880	pseudogene	Chr3:60249614-60250514 (-)
129S1/SvImJ	ENSMUSG00200023561	pseudogene	Chr3:57145408-57146143 (-)
A/J	ENSMUSG00195033061	pseudogene	Chr3:57090579-57091314 (-)
AKR/J	ENSMUSG00220031914	pseudogene	Chr3:59564108-59564843 (+)
BALB/cJ	ENSMUSG00180027921	pseudogene	Chr3:57140486-57141221 (-)
C3H/HeJ	ENSMUSG00175008954	pseudogene	Chr3:56987085-56987820 (-)
C57BL/6NJ	ENSMUSG00215009854	pseudogene	Chr3:57431847-57432582 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010869	pseudogene	Chr3:54274831-54275559 (-)
CAST/EiJ	ENSTCUG00005002480	pseudogene	Chr3:56753528-56754263 (-)
CBA/J	ENSMUSG00210003965	pseudogene	Chr3:57097454-57098189 (-)
DBA/2J	ENSMUSG00185028517	pseudogene	Chr3:57255404-57256139 (-)
FVB/NJ	ENSMUSG00205003829	pseudogene	Chr3:56263054-56263789 (-)
JF1/MsJ	ENSUMUG00000004096	pseudogene	Chr3:56995645-56996378 (-)
LP/J	ENSMUSG00230004612	pseudogene	Chr3:59277375-59278110 (-)
NOD/ShiLtJ	ENSMUSG00190035958	pseudogene	Chr3:57489561-57490296 (-)
NZO/HlLtJ	ENSMUSG00225002227	pseudogene	Chr3:61877880-61878615 (-)
PWK/PhJ	ENSLUMG00010005724	pseudogene	Chr3:56802537-56803270 (-)
SPRET/EiJ	ENSMSPG00010008055	pseudogene	Chr3:57564801-57565542 (-)
WSB/EiJ	ENSIUOG00005018479	pseudogene	Chr6:76897777-76898512 (+)

Homology

• Gene Tree
  Tgif1-ps
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Tgif1-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000107270 (Evidence)
• NCBI Gene
  669823

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107270	Ensembl Gene Model | MGI Sequence Detail	736	C57BL/6J
transcript	ENSMUST00000201864	Ensembl | MGI Sequence Detail	736	Not Applicable

References

• Summaries
  All 7

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426