Gm9456 Gene Detail

Summary

• Symbol
  Gm9456
• Name
  predicted gene 9456

• Feature Type
  lncRNA gene
• IDs
  MGI:3779866
  NCBI Gene: 669389
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr18:80512914-80514721 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779866	lncRNA gene	Chr18:80512914-80514721 (+)
129S1/SvImJ	ENSMUSG00200029896	lncRNA gene	Chr18:77730629-77731136 (+)
A/J	ENSMUSG00195005237	lncRNA gene	Chr18:77814944-77815452 (+)
AKR/J	ENSMUSG00220017454	lncRNA gene	Chr18:77757715-77758222 (+)
BALB/cJ	ENSMUSG00180013620	lncRNA gene	Chr18:78385163-78385671 (+)
C3H/HeJ	ENSMUSG00175013555	lncRNA gene	Chr18:77930648-77931155 (+)
C57BL/6NJ	ENSMUSG00215031182	lncRNA gene	Chr18:77292895-77293402 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029892	lncRNA gene	Chr18:76847033-76847537 (+)
CBA/J	ENSMUSG00210037751	lncRNA gene	Chr18:77881219-77881726 (+)
DBA/2J	ENSMUSG00185011612	lncRNA gene	Chr18:77786468-77786975 (+)
FVB/NJ	ENSMUSG00205018765	lncRNA gene	Chr18:77208037-77208544 (+)
JF1/MsJ	ENSUMUG00000038277	lncRNA gene	Chr18:77696442-77696949 (+)
LP/J	ENSMUSG00230013586	lncRNA gene	Chr18:79836895-79837402 (+)
NOD/ShiLtJ	ENSMUSG00190024624	lncRNA gene	Chr18:77587257-77587765 (+)
NZO/HlLtJ	ENSMUSG00225034663	lncRNA gene	Chr18:79715419-79715926 (+)
PWK/PhJ	ENSLUMG00010007240	lncRNA gene	Chr18:78085693-78086200 (+)
SPRET/EiJ	ENSMSPG00010010000	lncRNA gene	Chr18:78451298-78451805 (+)
WSB/EiJ	ENSIUOG00005008635	lncRNA gene	Chr18:77263527-77264035 (+)

Homology

• Gene Tree
  Gm9456
  

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000120406 (Evidence)
• NCBI Gene
  669389

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120406	Ensembl Gene Model | MGI Sequence Detail	1808	C57BL/6J
transcript	ENSMUST00000243120	Ensembl | MGI Sequence Detail	1808	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm9456:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr152109	Chr18:80513333-80513349 (+)	427 bp
Tssr152110	Chr18:80513373-80513386 (+)	466 bp