Gpx4-ps2 Pseudogene Detail

Summary

• Symbol
  Gpx4-ps2
• Name
  glutathione peroxidase 4, pseudogene 2
• Synonyms
  Gm7338

• Feature Type
  pseudogene
• IDs
  MGI:3779731
  NCBI Gene: 664781
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:45751387-45751941 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 23.87 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  146 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779731	pseudogene	Chr10:45751386-45752162 (+)
129S1/SvImJ	ENSMUSG00200007578	pseudogene	Chr10:42653975-42654785 (+)
A/J	ENSMUSG00195003126	pseudogene	Chr10:42919630-42920437 (+)
AKR/J	ENSMUSG00220006724	pseudogene	Chr10:42614136-42614944 (+)
BALB/cJ	ENSMUSG00180011966	pseudogene	Chr10:43008795-43009605 (+)
C3H/HeJ	ENSMUSG00175010065	pseudogene	Chr10:42800872-42801681 (+)
C57BL/6NJ	ENSMUSG00215002293	pseudogene	Chr10:42546330-42547138 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005008791	pseudogene	Chr10:42952259-42952264 (+)
CBA/J	ENSMUSG00210008371	pseudogene	Chr10:42701114-42701922 (+)
DBA/2J	ENSMUSG00185003249	pseudogene	Chr10:42843410-42844218 (+)
FVB/NJ	ENSMUSG00205005067	pseudogene	Chr10:42759072-42759880 (+)
JF1/MsJ	ENSUMUG00000028408	pseudogene	Chr10:42661114-42661119 (+)
LP/J	ENSMUSG00230005986	pseudogene	Chr10:44647644-44648453 (+)
NOD/ShiLtJ	ENSMUSG00190005652	pseudogene	Chr10:42985542-42986350 (+)
NZO/HlLtJ	ENSMUSG00225018780	pseudogene	Chr10:48933134-48933942 (+)
PWK/PhJ	ENSLUMG00010005115	pseudogene	Chr10:42746286-42746286 (+)
SPRET/EiJ	ENSMSPG00010013060	pseudogene	Chr10:43797408-43797413 (+)
WSB/EiJ	ENSIUOG00005015344	pseudogene	Chr10:42513838-42513843 (+)

Homology

• Gene Tree
  Gpx4-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gpx4-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000110841 (Evidence)
• NCBI Gene
  664781

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110841	Ensembl Gene Model | MGI Sequence Detail	555	C57BL/6J
transcript	ENSMUST00000214811	Ensembl | MGI Sequence Detail	555	Not Applicable

Other
Accession IDs

MGI:5909034

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gpx4-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93205	Chr10:45751400-45751405 (+)	16 bp