Gm7048 Pseudogene Detail

Summary

• Symbol
  Gm7048
• Name
  predicted gene 7048

• Feature Type
  pseudogene
• IDs
  MGI:3779657
  NCBI Gene: 630942
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:88379209-88381099 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 43.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  227 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779657	pseudogene	Chr5:88379105-88381200 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195025898	pseudogene	Chr5:83280845-83282735 (+)
AKR/J	ENSMUSG00220012478	pseudogene	Chr5:83421254-83423144 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215033899	pseudogene	Chr5:83973903-83975793 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039080	pseudogene	Chr5:82894581-82896470 (+)
CAST/EiJ	ENSTCUG00005039545	pseudogene	Chr5:82824606-82826487 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	ENSMUSG00205034499	pseudogene	Chr5:82818392-82820282 (+)
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010031869	pseudogene	Chr5:82913508-82915398 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm7048
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm7048
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000106593 (Evidence)
• NCBI Gene
  630942

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106593	Ensembl Gene Model | MGI Sequence Detail	1891	C57BL/6J
transcript	ENSMUST00000199395	Ensembl | MGI Sequence Detail	1891	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17