Gm6888 Pseudogene Detail

Summary

• Symbol
  Gm6888
• Name
  predicted gene 6888

• Feature Type
  pseudogene
• IDs
  MGI:3779638
  NCBI Gene: 628515
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:65146748-65148149 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 34.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779638	pseudogene	Chr13:65146647-65148173 (+)
129S1/SvImJ	ENSMUSG00200013893	pseudogene	Chr13:61248061-61249469 (+)
A/J	ENSMUSG00195031355	pseudogene	Chr13:61413386-61414794 (+)
AKR/J	ENSMUSG00220041497	pseudogene	Chr13:60489819-60491227 (+)
BALB/cJ	ENSMUSG00180027081	pseudogene	Chr13:61712853-61714261 (+)
C3H/HeJ	ENSMUSG00175008969	pseudogene	Chr13:61536873-61538281 (+)
C57BL/6NJ	ENSMUSG00215013490	pseudogene	Chr13:61558451-61559852 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012022	pseudogene	Chr13:61896003-61896811 (+)
CBA/J	ENSMUSG00210009256	pseudogene	Chr13:61736340-61737748 (+)
DBA/2J	ENSMUSG00185008944	pseudogene	Chr13:62568950-62570358 (+)
FVB/NJ	ENSMUSG00205029642	pseudogene	Chr13:60724623-60726031 (+)
JF1/MsJ	ENSUMUG00000037553	pseudogene	Chr13:62217057-62218458 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190037787	pseudogene	Chr13:61478314-61479722 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010012606	pseudogene	Chr13:61025536-61026942 (+)
SPRET/EiJ	ENSMSPG00010034999	pseudogene	Chr13:61292650-61294013 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm6888
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm6888
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000113807 (Evidence)
• NCBI Gene
  628515

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113807	Ensembl Gene Model | MGI Sequence Detail	1402	C57BL/6J
transcript	ENSMUST00000221983	Ensembl | MGI Sequence Detail	706	Not Applicable

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69