Gm6633 Pseudogene Detail

Summary

• Symbol
  Gm6633
• Name
  predicted gene 6633

• Feature Type
  pseudogene
• IDs
  MGI:3779618
  NCBI Gene: 102636156
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:36563009-36563278 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 19.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779618	pseudogene	Chr17:36562837-36563867 (-)
129S1/SvImJ	ENSMUSG00200051917	pseudogene	Chr17:32164860-32165129 (-)
A/J	ENSMUSG00195049335	pseudogene	Chr17:33246234-33246503 (-)
AKR/J	ENSMUSG00220052851	pseudogene	Chr17:32037782-32038051 (-)
BALB/cJ	ENSMUSG00180046121	pseudogene	Chr17:32666510-32666779 (-)
C3H/HeJ	ENSMUSG00175046291	pseudogene	Chr17:31923579-31923848 (-)
C57BL/6NJ	ENSMUSG00215053793	pseudogene	Chr17:31992915-31993184 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010190	pseudogene	Chr17:46981010-46981294 (+)
CAST/EiJ	ENSTCUG00005052180	pseudogene	Chr17:33061201-33061470 (-)
CBA/J	ENSMUSG00210052427	pseudogene	Chr17:31745576-31745845 (-)
DBA/2J	ENSMUSG00185055229	pseudogene	Chr17:34685641-34685910 (-)
FVB/NJ	ENSMUSG00205053692	pseudogene	Chr17:32302421-32302690 (-)
JF1/MsJ	ENSUMUG00000057512	pseudogene	Chr17:33644864-33645133 (-)
LP/J	ENSMUSG00230054840	pseudogene	Chr17:35831351-35831620 (-)
NOD/ShiLtJ	ENSMUSG00190053993	pseudogene	Chr17:31921501-31921770 (-)
NZO/HlLtJ	ENSMUSG00225054987	pseudogene	Chr17:37749578-37749847 (-)
PWK/PhJ	ENSLUMG00010046467	pseudogene	Chr17:31483300-31483569 (-)
SPRET/EiJ	ENSMSPG00010050828	pseudogene	Chr17:32805237-32805568 (-)
WSB/EiJ	ENSIUOG00005052373	pseudogene	Chr17:32817539-32817808 (-)

Homology

• Gene Tree
  Gm6633
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm6633
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000092317 (Evidence)
• NCBI Gene
  102636156

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092317	Ensembl Gene Model | MGI Sequence Detail	270	C57BL/6J
transcript	ENSMUST00000173851	Ensembl | MGI Sequence Detail	270	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53

TSS for Gm6633:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147967	Chr17:36563379-36563395 (-)	-109 bp