Gm6602 Gene Detail

Summary

• Symbol
  Gm6602
• Name
  predicted gene 6602

• Feature Type
  lncRNA gene
• IDs
  MGI:3779614
  NCBI Gene: 625585
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:111789219-111989317 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  6072 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779614	lncRNA gene	Chr3:111789219-111989317 (+)
129S1/SvImJ	ENSMUSG00200035918	lncRNA gene	Chr3:108431460-108627842 (+)
A/J	ENSMUSG00195026201	lncRNA gene	Chr3:108822074-109018521 (+)
AKR/J	ENSMUSG00220034662	lncRNA gene	Chr3:107205790-107402275 (+)
BALB/cJ	ENSMUSG00180021164	lncRNA gene	Chr3:108802724-108999201 (+)
C3H/HeJ	ENSMUSG00175031696	lncRNA gene	Chr3:108325524-108521951 (+)
C57BL/6NJ	ENSMUSG00215035478	lncRNA gene	Chr3:109064321-109264439 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026937	lncRNA gene	Chr3:109276280-109473003 (+)
CBA/J	ENSMUSG00210009085	lncRNA gene	Chr3:108925116-109121546 (+)
DBA/2J	ENSMUSG00185022295	lncRNA gene	Chr3:109412218-109608709 (+)
FVB/NJ	ENSMUSG00205032171	lncRNA gene	Chr3:107958879-108159531 (+)
JF1/MsJ	ENSUMUG00000006158	lncRNA gene	Chr3:108399552-108600349 (+)
LP/J	ENSMUSG00230021379	lncRNA gene	Chr3:111326337-111522749 (+)
NOD/ShiLtJ	ENSMUSG00190041723	lncRNA gene	Chr3:109719448-109915923 (+)
NZO/HlLtJ	ENSMUSG00225003584	lncRNA gene	Chr3:113834799-114031278 (+)
PWK/PhJ	ENSLUMG00010024923	lncRNA gene	Chr3:108241778-108442875 (+)
SPRET/EiJ	ENSMSPG00010037580	lncRNA gene	Chr3:108827117-109036632 (+)
WSB/EiJ	ENSIUOG00005005290	lncRNA gene	Chr3:108960168-109161301 (+)

Homology

• Gene Tree
  Gm6602
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm6602
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000104543 (Evidence)
• NCBI Gene
  625585

Representative Sequences			Length	Strain/Species
genomic	625585	NCBI Gene Model | MGI Sequence Detail	200099	C57BL/6J
transcript	NR_045362	RefSeq | MGI Sequence Detail	1927	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426