Gm6344 Pseudogene Detail

Summary

• Symbol
  Gm6344
• Name
  predicted gene 6344

• Feature Type
  pseudogene
• IDs
  MGI:3779586
  NCBI Gene: 622707
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:55233590-55234072 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 29.80 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779586	pseudogene	Chr13:55233565-55234186 (+)
129S1/SvImJ	ENSMUSG00200017032	pseudogene	Chr13:52105721-52106203 (+)
A/J	ENSMUSG00195046477	pseudogene	Chr13:51571448-51571930 (+)
AKR/J	ENSMUSG00220044115	pseudogene	Chr13:51115473-51115955 (+)
BALB/cJ	ENSMUSG00180016738	pseudogene	Chr13:51822710-51823192 (+)
C3H/HeJ	ENSMUSG00175045639	pseudogene	Chr13:51609190-51609672 (+)
C57BL/6NJ	ENSMUSG00215041429	pseudogene	Chr13:51635298-51635780 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053409	pseudogene	Chr7:91326347-91326828 (-)
CAST/EiJ	ENSTCUG00005049293	pseudogene	Chr4:126485534-126486017 (-)
CAST/EiJ	ENSTCUG00005040723	pseudogene	Chr13:52032439-52032921 (+)
CAST/EiJ	ENSTCUG00005032746	pseudogene	Chr7:7616279-7616761 (+)
CBA/J	ENSMUSG00210040774	pseudogene	Chr13:51814005-51814487 (+)
DBA/2J	ENSMUSG00185017073	pseudogene	Chr13:52657058-52657540 (+)
FVB/NJ	ENSMUSG00205048439	pseudogene	Chr12:106328085-106328567 (-)
FVB/NJ	ENSMUSG00205053272	pseudogene	Chr2:83886228-83886710 (+)
FVB/NJ	ENSMUSG00205046193	pseudogene	Chr13:51462216-51462698 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230035229	pseudogene	Chr13:62001523-62002005 (+)
NOD/ShiLtJ	ENSMUSG00190039901	pseudogene	Chr13:51702443-51702925 (+)
NZO/HlLtJ	ENSMUSG00225035219	pseudogene	Chr13:55728843-55729325 (+)
NZO/HlLtJ	ENSMUSG00225053992	pseudogene	Chr2:94210643-94211125 (+)
NZO/HlLtJ	ENSMUSG00225024872	pseudogene	Chr9:103781106-103782573 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005026248	pseudogene	Chr13:51133140-51133622 (+)

Homology

• Gene Tree
  Gm6344
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm6344
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000094446 (Evidence)
• NCBI Gene
  622707

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094446	Ensembl Gene Model | MGI Sequence Detail	483	C57BL/6J
transcript	ENSMUST00000075962	Ensembl | MGI Sequence Detail	483	Not Applicable

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:190741 Migdalska AM, et al., Generation of the Sotos syndrome deletion in mice. Mamm Genome. 2012 Dec;23(11-12):749-57