Gm6083 Pseudogene Detail

Summary

• Symbol
  Gm6083
• Name
  predicted gene 6083

• Feature Type
  pseudogene
• IDs
  MGI:3779550
  NCBI Gene: 619355
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:29743151-29743507 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 15.09 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779550	pseudogene	Chr5:29742947-29743622 (+)
129S1/SvImJ	ENSMUSG00200014503	pseudogene	Chr5:25220212-25220568 (+)
A/J	ENSMUSG00195050097	pseudogene	Chr5:24682139-24682495 (+)
AKR/J	ENSMUSG00220009348	pseudogene	Chr5:24685943-24686299 (+)
BALB/cJ	ENSMUSG00180038422	pseudogene	Chr5:24486769-24487125 (+)
C3H/HeJ	ENSMUSG00175048486	pseudogene	Chr5:26461207-26461563 (+)
C57BL/6NJ	ENSMUSG00215042742	pseudogene	Chr5:25205508-25205864 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010216	pseudogene	Chr17:73898173-73898531 (-)
CAST/EiJ	ENSTCUG00005024892	pseudogene	Chr5:24652132-24652484 (+)
CBA/J	ENSMUSG00210049602	pseudogene	Chr5:25434425-25434781 (+)
DBA/2J	ENSMUSG00185040352	pseudogene	Chr5:27296861-27297217 (+)
FVB/NJ	ENSMUSG00205042590	pseudogene	Chr5:24194610-24194966 (+)
JF1/MsJ	ENSUMUG00000054456	pseudogene	Chr5:31820426-31820778 (+)
LP/J	ENSMUSG00230048416	pseudogene	Chr5:31904787-31905143 (+)
NOD/ShiLtJ	ENSMUSG00190016000	pseudogene	Chr5:24493953-24494309 (+)
NZO/HlLtJ	ENSMUSG00225021679	pseudogene	Chr5:37121633-37121989 (+)
PWK/PhJ	ENSLUMG00010047860	pseudogene	Chr5:24589855-24590207 (+)
SPRET/EiJ	ENSMSPG00010044392	pseudogene	Chr5:25733155-25733512 (+)
WSB/EiJ	ENSIUOG00005042369	pseudogene	Chr5:27378987-27379343 (+)

Homology

• Gene Tree
  Gm6083
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  5 involving Gm6083
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000078182 (Evidence)
• NCBI Gene
  619355

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078182	Ensembl Gene Model | MGI Sequence Detail	357	C57BL/6J
transcript	ENSMUST00000075518	Ensembl | MGI Sequence Detail	357	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3779129

References

• Summaries
  All 20

  Diseases 1

  Phenotypes 9
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:107238 Amano H, et al., Identification and targeted disruption of the mouse gene encoding ESG1 (PH34/ECAT2/DPPA5). BMC Dev Biol. 2006;6:11

TSS for Gm6083:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr45534	Chr5:29743087-29743093 (+)	-61 bp