Gm5924 Pseudogene Detail

Summary

• Symbol
  Gm5924
• Name
  predicted gene 5924

• Feature Type
  pseudogene
• IDs
  MGI:3779535
  NCBI Gene: 546182
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:5251795-5252505 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 2.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779535	pseudogene	ChrX:5250912-5252511 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	ENSMUSG00175037375	pseudogene	ChrX:58126915-58128574 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185030734	pseudogene	ChrX:4069772-4071431 (+)
DBA/2J	ENSMUSG00185030911	pseudogene	ChrX:5194475-5196134 (+)
DBA/2J	ENSMUSG00185030813	pseudogene	ChrX:4296544-4298200 (+)
DBA/2J	ENSMUSG00185030665	pseudogene	ChrX:3861723-3863381 (+)
DBA/2J	ENSMUSG00185029120	pseudogene	ChrX:6614068-6615727 (+)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230010332	pseudogene	Chr13:7062018-7063677 (+)
LP/J	ENSMUSG00230009889	pseudogene	Chr13:3664961-3666620 (+)
LP/J	ENSMUSG00230009991	pseudogene	Chr13:4858324-4859983 (-)
LP/J	ENSMUSG00230007942	pseudogene	ChrX:6804597-6806255 (-)
LP/J	ENSMUSG00230010417	pseudogene	Chr13:8157205-8158892 (-)
LP/J	ENSMUSG00230010194	pseudogene	Chr13:4107416-4109075 (-)
LP/J	ENSMUSG00230032728	pseudogene	ChrX:11163835-11165494 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225046683	pseudogene	ChrX:12230123-12231782 (+)
NZO/HlLtJ	ENSMUSG00225038220	pseudogene	ChrX:7089090-7090748 (+)
NZO/HlLtJ	ENSMUSG00225045793	pseudogene	ChrX:16399997-16401656 (+)
NZO/HlLtJ	ENSMUSG00225046334	pseudogene	ChrX:11479152-11480811 (+)
NZO/HlLtJ	ENSMUSG00225046772	pseudogene	ChrX:14088928-14090584 (+)
PWK/PhJ	ENSLUMG00010047660	pseudogene	ChrX:53864929-53866588 (-)
PWK/PhJ	ENSLUMG00010048423	pseudogene	ChrX:55380404-55382063 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005049988	pseudogene	ChrX:56441775-56443434 (+)

Homology

• Gene Tree
  Gm5924
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000078210 (Evidence)
• NCBI Gene
  546182

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078210	Ensembl Gene Model | MGI Sequence Detail	711	C57BL/6J
transcript	ENSMUST00000132554	Ensembl | MGI Sequence Detail	711	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;