Gm5881 Pseudogene Detail

Summary

• Symbol
  Gm5881
• Name
  predicted gene 5881

• Feature Type
  pseudogene
• IDs
  MGI:3779532
  NCBI Gene: 545867
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:96009984-96010350 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 44.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779532	pseudogene	Chr6:96009978-96010351 (-)
129S1/SvImJ	ENSMUSG00200021066	pseudogene	Chr6:92993689-92994055 (-)
A/J	ENSMUSG00195002327	pseudogene	Chr6:92715385-92715751 (-)
AKR/J	ENSMUSG00220022516	pseudogene	Chr6:91600992-91601358 (-)
BALB/cJ	ENSMUSG00180010134	pseudogene	Chr6:93081974-93082340 (-)
C3H/HeJ	ENSMUSG00175026801	pseudogene	Chr6:84343035-84343401 (+)
C57BL/6NJ	ENSMUSG00215014570	pseudogene	Chr6:93085818-93086184 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012118	pseudogene	Chr7:15934912-15935633 (-)
CAST/EiJ	ENSTCUG00005001491	pseudogene	Chr6:93176525-93176891 (-)
CBA/J	ENSMUSG00210004119	pseudogene	Chr6:92880265-92880631 (-)
DBA/2J	ENSMUSG00185026417	pseudogene	Chr6:93384126-93384492 (-)
FVB/NJ	ENSMUSG00205012656	pseudogene	Chr6:92052615-92052981 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230013846	pseudogene	Chr6:94548255-94548621 (-)
NOD/ShiLtJ	ENSMUSG00190003063	pseudogene	Chr6:92485409-92485775 (-)
NZO/HlLtJ	ENSMUSG00225040562	pseudogene	Chr6:96552437-96552803 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005002954	pseudogene	Chr6:93468408-93468774 (-)

Homology

• Gene Tree
  Gm5881
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000107747 (Evidence)
• NCBI Gene
  545867

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107747	Ensembl Gene Model | MGI Sequence Detail	367	C57BL/6J
transcript	ENSMUST00000204737	Ensembl | MGI Sequence Detail	367	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm5881:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr62189	Chr6:96010256-96010278 (-)	83 bp