Gm5817 Gene Detail

Summary

• Symbol
  Gm5817
• Name
  predicted gene 5817

• Feature Type
  lncRNA gene
• IDs
  MGI:3779527
  NCBI Gene: 115488784
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:86472895-86474913 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779527	lncRNA gene	Chr17:86463035-86474998 (-)
129S1/SvImJ	ENSMUSG00200022955	lncRNA gene	Chr17:81866411-81878239 (-)
A/J	ENSMUSG00195029638	lncRNA gene	Chr17:83247140-83259003 (-)
AKR/J	ENSMUSG00220016545	lncRNA gene	Chr17:82196839-82208764 (-)
BALB/cJ	ENSMUSG00180028345	lncRNA gene	Chr17:82919329-82931187 (-)
C3H/HeJ	ENSMUSG00175007101	lncRNA gene	Chr17:82185257-82197112 (-)
C57BL/6NJ	ENSMUSG00215023558	lncRNA gene	Chr17:81905751-81917581 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011832	lncRNA gene	Chr17:82734056-82746053 (-)
CBA/J	ENSMUSG00210022440	lncRNA gene	Chr17:82044003-82055852 (-)
DBA/2J	ENSMUSG00185021125	lncRNA gene	Chr17:84857264-84875716 (-)
FVB/NJ	ENSMUSG00205006372	lncRNA gene	Chr17:82663892-82682263 (-)
JF1/MsJ	ENSUMUG00000017577	lncRNA gene	Chr17:84594742-84608225 (-)
LP/J	ENSMUSG00230010627	lncRNA gene	Chr17:85891832-85903678 (-)
NOD/ShiLtJ	ENSMUSG00190009673	lncRNA gene	Chr17:81942699-81954611 (-)
NZO/HlLtJ	ENSMUSG00225031787	lncRNA gene	Chr17:88147423-88159317 (-)
PWK/PhJ	ENSLUMG00010033024	lncRNA gene	Chr17:81801860-81820250 (-)
SPRET/EiJ	ENSMSPG00010021034	lncRNA gene	Chr17:82392648-82405192 (-)
WSB/EiJ	ENSIUOG00005022601	lncRNA gene	Chr17:82856310-82874674 (-)

Homology

• Gene Tree
  Gm5817
  

Expression

• cDNA Data
  14

Sequences &
Gene Models

• All Sequences
  47
• RefSeq
  1

• Ensembl
  ENSMUSG00000120162 (Evidence)
• NCBI Gene
  115488784

Representative Sequences			Length	Strain/Species
genomic	115488784	NCBI Gene Model | MGI Sequence Detail	2019	C57BL/6J
transcript	NR_165800	RefSeq | MGI Sequence Detail	1286	ZRU/MplStud

Molecular
Reagents

• All nucleic 15

  Genomic 1

  cDNA 14

References

• Summaries
  All 7
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Gm5817:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149729	Chr17:86474877-86474921 (-)	14 bp