Gm5672 Pseudogene Detail

Summary

• Symbol
  Gm5672
• Name
  predicted gene 5672

• Feature Type
  pseudogene
• IDs
  MGI:3779510
  NCBI Gene: 435422
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:118612673-118613606 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 62.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  192 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779510	pseudogene	Chr14:118612477-118613707 (-)
129S1/SvImJ	ENSMUSG00200025322	pseudogene	Chr14:107488053-107488998 (-)
A/J	ENSMUSG00195032019	pseudogene	Chr14:107234391-107235324 (-)
AKR/J	ENSMUSG00220008187	pseudogene	Chr14:107027764-107028697 (-)
BALB/cJ	ENSMUSG00180028944	pseudogene	Chr14:106726397-106727330 (-)
C3H/HeJ	ENSMUSG00175005770	pseudogene	Chr14:108662152-108663085 (-)
C57BL/6NJ	ENSMUSG00215027414	pseudogene	Chr14:106878600-106879533 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007317	pseudogene	Chr14:108302828-108303761 (-)
CBA/J	ENSMUSG00210027754	pseudogene	Chr14:107630703-107631636 (-)
DBA/2J	ENSMUSG00185014034	pseudogene	Chr14:112786846-112787779 (-)
FVB/NJ	ENSMUSG00205008241	pseudogene	Chr14:106321727-106322660 (-)
JF1/MsJ	ENSUMUG00000028702	pseudogene	Chr14:123810345-123811290 (-)
LP/J	ENSMUSG00230012652	pseudogene	Chr14:124777417-124778350 (-)
NOD/ShiLtJ	ENSMUSG00190027445	pseudogene	Chr14:107436012-107436945 (-)
NZO/HlLtJ	ENSMUSG00225029234	pseudogene	Chr14:114796225-114797158 (-)
PWK/PhJ	ENSLUMG00010030185	pseudogene	Chr14:106698454-106699387 (-)
SPRET/EiJ	ENSMSPG00010012545	pseudogene	Chr14:110942543-110943468 (-)
WSB/EiJ	ENSIUOG00005031662	pseudogene	Chr14:106657134-106658067 (-)

Homology

• Gene Tree
  Gm5672
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5672
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000115515 (Evidence)
• NCBI Gene
  435422

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000115515	Ensembl Gene Model | MGI Sequence Detail	934	C57BL/6J
transcript	ENSMUST00000226188	Ensembl | MGI Sequence Detail	934	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;