Gm5628 Pseudogene Detail

Summary

• Symbol
  Gm5628
• Name
  predicted gene 5628

• Feature Type
  pseudogene
• IDs
  MGI:3779506
  NCBI Gene: 434585
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:18124493-18125541 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 6.05 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779506	pseudogene	Chr13:18124486-18125691 (+)
129S1/SvImJ	ENSMUSG00200014804	pseudogene	Chr13:15363479-15364527 (+)
A/J	ENSMUSG00195040613	pseudogene	Chr13:14474360-14475408 (+)
AKR/J	ENSMUSG00220033596	pseudogene	Chr13:14395323-14396371 (+)
BALB/cJ	ENSMUSG00180036136	pseudogene	Chr13:14828986-14830034 (+)
C3H/HeJ	ENSMUSG00175035798	pseudogene	Chr13:14930751-14931799 (+)
C57BL/6NJ	ENSMUSG00215034907	pseudogene	Chr13:14880728-14881776 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013880	pseudogene	Chr13:14968163-14969211 (+)
CBA/J	ENSMUSG00210032323	pseudogene	Chr13:14790690-14791738 (+)
DBA/2J	ENSMUSG00185013888	pseudogene	Chr13:15492027-15493075 (+)
FVB/NJ	ENSMUSG00205051469	pseudogene	Chr13:14649526-14650574 (+)
JF1/MsJ	ENSUMUG00000021490	pseudogene	Chr13:15216287-15217335 (+)
LP/J	ENSMUSG00230036951	pseudogene	Chr13:24894445-24895493 (+)
NOD/ShiLtJ	ENSMUSG00190023258	pseudogene	Chr13:14754124-14755172 (+)
NZO/HlLtJ	ENSMUSG00225032650	pseudogene	Chr13:18643772-18644820 (+)
PWK/PhJ	ENSLUMG00010030232	pseudogene	Chr13:14194845-14195893 (+)
SPRET/EiJ	ENSMSPG00010020478	pseudogene	Chr13:13844656-13845704 (+)
WSB/EiJ	ENSIUOG00005034649	pseudogene	Chr13:14082323-14083370 (+)

Homology

• Gene Tree
  Gm5628
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000113750 (Evidence)
• NCBI Gene
  434585

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113750	Ensembl Gene Model | MGI Sequence Detail	1049	C57BL/6J
transcript	ENSMUST00000222318	Ensembl | MGI Sequence Detail	1049	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;