Gm5511 Pseudogene Detail

Summary

• Symbol
  Gm5511
• Name
  predicted gene 5511

• Feature Type
  pseudogene
• IDs
  MGI:3779492
  NCBI Gene: 433221
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:11415393-11416193 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 8.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779492	pseudogene	Chr19:11415393-11416196 (+)
129S1/SvImJ	ENSMUSG00200053410	pseudogene	Chr19:8095392-8096193 (+)
A/J	ENSMUSG00195053751	pseudogene	Chr19:8299740-8300541 (+)
AKR/J	ENSMUSG00220051675	pseudogene	Chr19:8210512-8211313 (+)
BALB/cJ	ENSMUSG00180052650	pseudogene	Chr19:8664325-8665126 (+)
C3H/HeJ	ENSMUSG00175014747	pseudogene	Chr19:7941087-7941888 (+)
C57BL/6NJ	ENSMUSG00215048565	pseudogene	Chr19:8012700-8013501 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044810	pseudogene	Chr19:7788891-7789692 (+)
CBA/J	ENSMUSG00210050738	pseudogene	Chr19:8139607-8140408 (+)
DBA/2J	ENSMUSG00185053491	pseudogene	Chr19:8549634-8550435 (+)
FVB/NJ	ENSMUSG00205053550	pseudogene	Chr19:8007370-8008171 (+)
JF1/MsJ	ENSUMUG00000056608	pseudogene	Chr19:8669290-8670089 (+)
LP/J	ENSMUSG00230054276	pseudogene	Chr19:9469970-9470771 (+)
NOD/ShiLtJ	ENSMUSG00190053060	pseudogene	Chr19:7762399-7763200 (+)
NZO/HlLtJ	ENSMUSG00225047383	pseudogene	Chr19:13178897-13179698 (+)
PWK/PhJ	ENSLUMG00010009180	pseudogene	Chr19:8070360-8071159 (+)
SPRET/EiJ	ENSMSPG00010051497	pseudogene	Chr19:7884251-7885041 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm5511
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm5511
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000100615 (Evidence)
• NCBI Gene
  433221

Representative Sequences			Length	Strain/Species
genomic	433221	NCBI Gene Model | MGI Sequence Detail	801	C57BL/6J

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:360844 Jiang HC, et al., CD20 is a mammalian odorant receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Res Sq. 2023 Sep 12;
• Latest
  J:360865 Jiang HC, et al., CD20/MS4A1 is a mammalian olfactory receptor expressed in a subset of olfactory sensory neurons that mediates innate avoidance of predators. Nat Commun. 2024 Apr 18;15(1):3360

TSS for Gm5511:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr155214	Chr19:11414511-11414514 (+)	-880 bp