Gm5373 Pseudogene Detail

Summary

• Symbol
  Gm5373
• Name
  predicted gene 5373

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3779485
  NCBI Gene: 385024
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:72578486-72634351 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 34.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  603 from dbSNP Build 142
• Strain Annotations
  26

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779485	pseudogene	Chr8:72277266-72677431 (-)
129S1/SvImJ	ENSMUSG00200033063	pseudogene	Chr8:66890401-66989724 (-)
A/J	no annotation
AKR/J	ENSMUSG00220025897	pseudogene	Chr8:66645947-66697557 (+)
AKR/J	ENSMUSG00220025933	pseudogene	Chr8:67368426-67475223 (-)
BALB/cJ	ENSMUSG00180029769	pseudogene	Chr8:66306135-66400963 (+)
C3H/HeJ	ENSMUSG00175022893	pseudogene	Chr8:67268379-67302752 (-)
C57BL/6NJ	ENSMUSG00215039254	pseudogene	Chr8:66834928-66882093 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040977	pseudogene	Chr8:66135427-66212546 (+)
CBA/J	ENSMUSG00210035885	pseudogene	Chr8:66410950-66447043 (+)
CBA/J	ENSMUSG00210035831	pseudogene	Chr8:67111983-67146346 (-)
DBA/2J	ENSMUSG00185013716	pseudogene	Chr8:72574647-72606682 (+)
DBA/2J	ENSMUSG00185013457	pseudogene	Chr8:73271607-73378804 (-)
FVB/NJ	ENSMUSG00205044194	pseudogene	Chr8:66381667-66464174 (-)
JF1/MsJ	ENSUMUG00000042713	pseudogene	Chr8:75530410-75704143 (-)
JF1/MsJ	ENSUMUG00000044423	pseudogene	Chr8:74844899-74876919 (+)
LP/J	ENSMUSG00230035822	pseudogene	Chr8:76883265-76913630 (-)
LP/J	ENSMUSG00230034845	pseudogene	Chr8:76956093-76990456 (-)
LP/J	ENSMUSG00230035812	pseudogene	Chr8:76186119-76218152 (+)
NOD/ShiLtJ	ENSMUSG00190032095	pseudogene	Chr8:66329401-66365251 (+)
NZO/HlLtJ	ENSMUSG00225049184	pseudogene	Chr8:80283200-80313564 (-)
NZO/HlLtJ	ENSMUSG00225049171	pseudogene	Chr8:79586278-79618321 (+)
NZO/HlLtJ	ENSMUSG00225048766	pseudogene	Chr8:80356018-80390381 (-)
PWK/PhJ	ENSLUMG00010036012	pseudogene	Chr8:66301680-66336812 (+)
PWK/PhJ	ENSLUMG00010036066	pseudogene	Chr8:66997499-67104210 (-)
SPRET/EiJ	ENSMSPG00010042010	pseudogene	Chr8:68665926-68812172 (-)
WSB/EiJ	ENSIUOG00005026824	pseudogene	Chr8:67883351-67990037 (-)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm5373
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  51
• RefSeq
  8

• Ensembl
  ENSMUSG00000110685 (Evidence), ENSMUSG00000121402 (Evidence)
• NCBI Gene
  385024

Representative Sequences			Length	Strain/Species
genomic	385024	NCBI Gene Model | MGI Sequence Detail	55866	C57BL/6J
transcript	XM_006509824	RefSeq | MGI Sequence Detail	2688	C57BL/6J
polypeptide	XP_011240650	RefSeq | MGI Sequence Detail	579	C57BL/6J

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;