Gm5237 Pseudogene Detail

Summary

• Symbol
  Gm5237
• Name
  predicted gene 5237

• Feature Type
  pseudogene
• IDs
  MGI:3779477
  NCBI Gene: 383326
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:48201389-48203089 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 25.34 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  241 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779477	pseudogene	Chr18:48201389-48203119 (-)
129S1/SvImJ	ENSMUSG00200031033	pseudogene	Chr18:45214766-45216465 (-)
A/J	ENSMUSG00195025317	pseudogene	Chr18:45393399-45395098 (-)
AKR/J	ENSMUSG00220021743	pseudogene	Chr18:45343175-45344874 (-)
BALB/cJ	ENSMUSG00180007962	pseudogene	Chr18:45876906-45878606 (-)
C3H/HeJ	ENSMUSG00175011089	pseudogene	Chr18:45389222-45390922 (-)
C57BL/6NJ	ENSMUSG00215009678	pseudogene	Chr18:45086916-45088616 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014110	pseudogene	Chr18:44810409-44812112 (-)
CBA/J	ENSMUSG00210022554	pseudogene	Chr18:45440958-45442658 (-)
DBA/2J	ENSMUSG00185028800	pseudogene	Chr18:45341190-45342890 (-)
FVB/NJ	ENSMUSG00205015521	pseudogene	Chr18:44827184-44828883 (-)
JF1/MsJ	ENSUMUG00000031862	pseudogene	Chr18:45352043-45353741 (-)
LP/J	ENSMUSG00230029452	pseudogene	Chr18:47426070-47427769 (-)
NOD/ShiLtJ	ENSMUSG00190028457	pseudogene	Chr18:45127809-45129508 (-)
NZO/HlLtJ	ENSMUSG00225027681	pseudogene	Chr18:47323554-47325254 (-)
PWK/PhJ	ENSLUMG00010022396	pseudogene	Chr18:45471516-45473214 (-)
SPRET/EiJ	ENSMSPG00010013551	pseudogene	Chr18:45668924-45670620 (-)
WSB/EiJ	ENSIUOG00005009803	pseudogene	Chr18:45045299-45046998 (-)

Homology

• Gene Tree
  Gm5237
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm5237
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000118097 (Evidence)
• NCBI Gene
  383326

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118097	Ensembl Gene Model | MGI Sequence Detail	1701	C57BL/6J
transcript	ENSMUST00000236601	Ensembl | MGI Sequence Detail	1197	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67