Gm5139 Pseudogene Detail

Summary

• Symbol
  Gm5139
• Name
  predicted gene 5139

• Feature Type
  pseudogene
• IDs
  MGI:3779465
  NCBI Gene: 380739
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:64070811-64071059 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 30.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  8 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779465	pseudogene	Chr3:64070811-64071268 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012187	pseudogene	Chr3:63232946-63233194 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0012470	pseudogene	Chr3:65544935-65545183 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011813	pseudogene	Chr3:62963726-62963974 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0012134	pseudogene	Chr3:64066259-64066507 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0012478	pseudogene	Chr3:62506440-62506688 (+)
PWK/PhJ	MGP_PWKPhJ_G0011657	pseudogene	Chr3:60430776-60431024 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0011844	pseudogene	Chr3:62633172-62633420 (+)

Homology

• Gene Tree
  Gm5139
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5139
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000093447 (Evidence)
• NCBI Gene
  380739

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093447	Ensembl Gene Model | MGI Sequence Detail	249	C57BL/6J
transcript	ENSMUST00000175943	Ensembl | MGI Sequence Detail	249	Not Applicable

References

• Summaries
  All 8

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426