Gm5139 Pseudogene Detail

Summary

• Symbol
  Gm5139
• Name
  predicted gene 5139

• Feature Type
  pseudogene
• IDs
  MGI:3779465
  NCBI Gene: 380739
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:64070811-64071059 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 30.15 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779465	pseudogene	Chr3:64070811-64071268 (+)
129S1/SvImJ	ENSMUSG00200001876	pseudogene	Chr3:60995968-60996216 (+)
A/J	ENSMUSG00195026695	pseudogene	Chr3:60929199-60929447 (+)
AKR/J	ENSMUSG00220024692	pseudogene	Chr3:60957921-60958169 (+)
BALB/cJ	ENSMUSG00180008442	pseudogene	Chr3:60981519-60981767 (+)
C3H/HeJ	ENSMUSG00175003808	pseudogene	Chr3:60823036-60823284 (+)
C57BL/6NJ	ENSMUSG00215006562	pseudogene	Chr3:61265350-61265598 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002500	pseudogene	Chr3:60605402-60605650 (+)
CBA/J	ENSMUSG00210002342	pseudogene	Chr3:60939116-60939364 (+)
DBA/2J	ENSMUSG00185015750	pseudogene	Chr3:61109466-61109714 (+)
FVB/NJ	ENSMUSG00205003808	pseudogene	Chr3:60092089-60092337 (+)
JF1/MsJ	ENSUMUG00000003367	pseudogene	Chr3:60801203-60801451 (+)
LP/J	ENSMUSG00230002801	pseudogene	Chr3:63132556-63132804 (+)
NOD/ShiLtJ	ENSMUSG00190003165	pseudogene	Chr3:61364238-61364486 (+)
NZO/HlLtJ	ENSMUSG00225002824	pseudogene	Chr3:65741883-65742131 (+)
PWK/PhJ	ENSLUMG00010005687	pseudogene	Chr3:60587605-60587853 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005016454	pseudogene	Chr3:61088916-61089164 (+)

Homology

• Gene Tree
  Gm5139
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm5139
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000093447 (Evidence)
• NCBI Gene
  380739

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000093447	Ensembl Gene Model | MGI Sequence Detail	249	C57BL/6J
transcript	ENSMUST00000175943	Ensembl | MGI Sequence Detail	249	Not Applicable

References

• Summaries
  All 9

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426