Gm5103 Gene Detail

Summary

• Symbol
  Gm5103
• Name
  predicted gene 5103

• Feature Type
  lncRNA gene
• IDs
  MGI:3779459
  NCBI Gene: 329636
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:51285467-51293745 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  386 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779459	lncRNA gene	Chr3:51285445-51293745 (+)
129S1/SvImJ	ENSMUSG00200000484	lncRNA gene	Chr3:48110029-48118121 (+)
A/J	ENSMUSG00195000817	lncRNA gene	Chr3:48071859-48080159 (+)
AKR/J	ENSMUSG00220015952	lncRNA gene	Chr3:48126371-48134671 (+)
BALB/cJ	ENSMUSG00180000650	lncRNA gene	Chr3:48149175-48157478 (+)
C3H/HeJ	ENSMUSG00175002166	lncRNA gene	Chr3:47980722-47988815 (+)
C57BL/6NJ	ENSMUSG00215000605	lncRNA gene	Chr3:48418695-48426999 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005622	lincRNA gene	Chr3:45029681-45038191 (+)
CAST/EiJ	ENSTCUG00005010007	lncRNA gene	Chr3:47798231-47806271 (+)
CBA/J	ENSMUSG00210000922	lncRNA gene	Chr3:48093613-48101710 (+)
DBA/2J	ENSMUSG00185000425	lncRNA gene	Chr3:48334228-48342528 (+)
FVB/NJ	ENSMUSG00205009785	lncRNA gene	Chr3:47312960-47321049 (+)
JF1/MsJ	ENSUMUG00000029050	lncRNA gene	Chr3:47755207-47763350 (+)
LP/J	ENSMUSG00230000552	lncRNA gene	Chr3:50282233-50290322 (+)
NOD/ShiLtJ	ENSMUSG00190000678	lncRNA gene	Chr3:48464154-48472453 (+)
NZO/HlLtJ	ENSMUSG00225018148	lncRNA gene	Chr3:52908758-52917059 (+)
PWK/PhJ	ENSLUMG00010010319	lncRNA gene	Chr3:47922270-47930363 (+)
SPRET/EiJ	ENSMSPG00010007617	lncRNA gene	Chr3:48572206-48580306 (+)
WSB/EiJ	ENSIUOG00005000457	lncRNA gene	Chr3:48261739-48269826 (+)

Homology

• Gene Tree
  Gm5103
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm5103
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  3

• Ensembl
  ENSMUSG00000102544 (Evidence)
• NCBI Gene
  329636

Representative Sequences			Length	Strain/Species
genomic	329636	NCBI Gene Model | MGI Sequence Detail	8279	C57BL/6J
transcript	AK042136	GenBank | ENA | DDBJ | MGI Sequence Detail	1086	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426