Gm4890 Gene Detail

Summary

• Symbol
  Gm4890
• Name
  predicted gene 4890

• Feature Type
  lncRNA gene
• IDs
  MGI:3779445
  NCBI Gene: 234479
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:80021707-80034403 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 37.53 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  339 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779445	lncRNA gene	Chr8:80021270-80059061 (+)
129S1/SvImJ	ENSMUSG00200025455	lncRNA gene	Chr8:74380554-74417964 (+)
A/J	ENSMUSG00195018413	lncRNA gene	Chr8:74731628-74769040 (+)
AKR/J	ENSMUSG00220023480	lncRNA gene	Chr8:74823446-74860858 (+)
BALB/cJ	ENSMUSG00180021734	lncRNA gene	Chr8:74582716-74620129 (+)
C3H/HeJ	ENSMUSG00175011717	lncRNA gene	Chr8:74661979-74699390 (+)
C57BL/6NJ	ENSMUSG00215026008	lncRNA gene	Chr8:74298435-74335846 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006681	lincRNA gene	Chr8:70853009-70865516 (+)
CAST/EiJ	ENSTCUG00005038465	lncRNA gene	Chr8:74226199-74263867 (+)
CBA/J	ENSMUSG00210020572	lncRNA gene	Chr8:74654006-74691416 (+)
DBA/2J	ENSMUSG00185040482	lncRNA gene	Chr8:80763188-80800599 (+)
FVB/NJ	ENSMUSG00205040663	lncRNA gene	Chr8:73753882-73791322 (+)
JF1/MsJ	ENSUMUG00000038072	lncRNA gene	Chr8:83102416-83139935 (+)
LP/J	ENSMUSG00230029511	lncRNA gene	Chr8:84381513-84418923 (+)
NOD/ShiLtJ	ENSMUSG00190029023	lncRNA gene	Chr8:74673426-74710859 (+)
NZO/HlLtJ	ENSMUSG00225023234	lncRNA gene	Chr8:87760305-87797738 (+)
PWK/PhJ	ENSLUMG00010030732	lncRNA gene	Chr8:74519141-74556614 (+)
SPRET/EiJ	ENSMSPG00010023771	lncRNA gene	Chr8:76249270-76287459 (+)
WSB/EiJ	ENSIUOG00005016085	lncRNA gene	Chr8:75437786-75475182 (+)

Homology

• Gene Tree
  Gm4890
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm4890
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  46
• RefSeq
  2

• Ensembl
  ENSMUSG00000097174 (Evidence)
• NCBI Gene
  234479

Representative Sequences			Length	Strain/Species
genomic	234479	NCBI Gene Model | MGI Sequence Detail	12697	C57BL/6J
transcript	NR_045822	RefSeq | MGI Sequence Detail	2642	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm4890:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78132	Chr8:80021647-80021664 (+)	-51 bp
Tssr78133	Chr8:80030885-80030890 (+)	9,181 bp