Mettl4-ps1 Pseudogene Detail

Summary

• Symbol
  Mettl4-ps1
• Name
  methyltransferase 4, pseudogene 1
• Synonyms
  ENSMUSG00000079356

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3779337
  NCBI Gene: 668740
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:71835981-71851202 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 41.87 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  753 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779337	pseudogene	Chr17:71833891-71863538 (+)
129S1/SvImJ	ENSMUSG00200039639	pseudogene	Chr17:67139178-67139481 (+)
A/J	ENSMUSG00195019684	pseudogene	Chr17:68518484-68548829 (+)
AKR/J	ENSMUSG00220018740	pseudogene	Chr17:67552136-67584012 (+)
BALB/cJ	ENSMUSG00180021617	pseudogene	Chr17:68254650-68284993 (+)
C3H/HeJ	ENSMUSG00175031463	pseudogene	Chr17:67540026-67540329 (+)
C57BL/6NJ	ENSMUSG00215029910	pseudogene	Chr17:67250020-67279669 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036957	pseudogene	Chr17:89950297-89965177 (-)
CAST/EiJ	ENSTCUG00005027915	pseudogene	Chr17:68094421-68124435 (+)
CBA/J	ENSMUSG00210030179	pseudogene	Chr17:67379826-67410170 (+)
DBA/2J	ENSMUSG00185023613	pseudogene	Chr17:70212778-70243121 (+)
FVB/NJ	ENSMUSG00205018152	pseudogene	Chr17:68024619-68054944 (+)
JF1/MsJ	ENSUMUG00000040915	pseudogene	Chr17:69876859-69906889 (+)
LP/J	ENSMUSG00230017059	pseudogene	Chr17:71169932-71199591 (+)
NOD/ShiLtJ	ENSMUSG00190039006	pseudogene	Chr17:67284014-67284317 (+)
NZO/HlLtJ	ENSMUSG00225029117	pseudogene	Chr17:73451733-73482065 (+)
PWK/PhJ	ENSLUMG00010029557	pseudogene	Chr17:67103191-67132879 (+)
SPRET/EiJ	ENSMSPG00010018344	pseudogene	Chr17:67452042-67480261 (+)
WSB/EiJ	ENSIUOG00005032932	pseudogene	Chr17:68231309-68261648 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  4
• Tissues
  4
• cDNA Data
  1
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000079356 (Evidence), ENSMUSG00000121397 (Evidence)
• NCBI Gene
  668740

Representative Sequences			Length	Strain/Species
genomic	668740	NCBI Gene Model | MGI Sequence Detail	15222	C57BL/6J
transcript	AK016064	GenBank | ENA | DDBJ | MGI Sequence Detail	1325	C57BL/6J

Molecular
Reagents

• All nucleic 2

  cDNA 1

  Primer pair 1

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:3779846

References

• Summaries
  All 11

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:187568 Kogo H, et al., Screening of genes involved in chromosome segregation during meiosis I: toward the identification of genes responsible for infertility in humans. J Hum Genet. 2010 May;55(5):293-9