Gm10988 Pseudogene Detail

Summary

• Symbol
  Gm10988
• Name
  predicted gene 10988

• Feature Type
  pseudogene
• IDs
  MGI:3779203
  NCBI Gene: 100416701
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:29851266-29852353 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 17.29 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779203	pseudogene	Chr7:29850821-29852353 (+)
129S1/SvImJ	ENSMUSG00200045549	pseudogene	Chr7:19632810-19633897 (+)
A/J	ENSMUSG00195049280	pseudogene	Chr7:22307427-22308531 (+)
AKR/J	ENSMUSG00220053636	pseudogene	Chr7:22178915-22180019 (-)
BALB/cJ	ENSMUSG00180023641	pseudogene	Chr7:20366858-20367962 (+)
C3H/HeJ	ENSMUSG00175038597	pseudogene	Chr7:21439952-21441039 (+)
C57BL/6NJ	ENSMUSG00215055025	pseudogene	Chr7:19542056-19543143 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048908	pseudogene	Chr7:21347296-21348382 (+)
CBA/J	ENSMUSG00210027439	pseudogene	Chr7:20602574-20603661 (+)
DBA/2J	ENSMUSG00185054178	pseudogene	Chr7:23698055-23699159 (+)
FVB/NJ	ENSMUSG00205024707	pseudogene	Chr7:20351572-20352659 (+)
JF1/MsJ	ENSUMUG00000057697	pseudogene	Chr7:28145150-28146449 (+)
LP/J	ENSMUSG00230054027	pseudogene	Chr7:28868536-28869640 (+)
NOD/ShiLtJ	ENSMUSG00190053121	pseudogene	Chr7:20032480-20033567 (+)
NZO/HlLtJ	ENSMUSG00225027438	pseudogene	Chr7:27709719-27710806 (+)
PWK/PhJ	ENSLUMG00010022453	pseudogene	Chr7:20072546-20073650 (+)
SPRET/EiJ	ENSMSPG00010051478	pseudogene	Chr7:19435331-19436434 (+)
WSB/EiJ	ENSIUOG00005053736	pseudogene	Chr7:14320519-14321606 (+)

Homology

• Gene Tree
  Gm10988
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000108926 (Evidence)
• NCBI Gene
  100416701

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000108926	Ensembl Gene Model | MGI Sequence Detail	1088	C57BL/6J
transcript	ENSMUST00000209150	Ensembl | MGI Sequence Detail	1088	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;