Gm10972 Pseudogene Detail

Summary

• Symbol
  Gm10972
• Name
  predicted gene 10972

• Feature Type
  pseudogene
• IDs
  MGI:3779183
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:94550405-94550903 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 40.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3779183	pseudogene	Chr3:94550405-94550903 (+)
129S1/SvImJ	ENSMUSG00200040560	pseudogene	Chr3:91208189-91208227 (+)
A/J	ENSMUSG00195049750	pseudogene	Chr3:91535485-91535523 (+)
AKR/J	ENSMUSG00220052587	pseudogene	Chr3:89922560-89922598 (+)
BALB/cJ	ENSMUSG00180045262	pseudogene	Chr3:91517364-91517402 (+)
C3H/HeJ	ENSMUSG00175033331	pseudogene	Chr3:91179183-91179221 (+)
C57BL/6NJ	ENSMUSG00215036631	pseudogene	Chr3:91894764-91895262 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005049118	pseudogene	Chr3:91725241-91725740 (+)
CBA/J	ENSMUSG00210051799	pseudogene	Chr3:91716681-91716719 (+)
DBA/2J	ENSMUSG00185045648	pseudogene	Chr3:92032680-92033178 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000054410	pseudogene	Chr3:91030815-91031313 (+)
LP/J	ENSMUSG00230045653	pseudogene	Chr3:94071700-94071738 (+)
NOD/ShiLtJ	ENSMUSG00190049074	pseudogene	Chr3:92198413-92198451 (+)
NZO/HlLtJ	ENSMUSG00225012525	pseudogene	Chr3:96478986-96479024 (+)
PWK/PhJ	ENSLUMG00010053061	pseudogene	Chr3:91010257-91010755 (+)
SPRET/EiJ	ENSMSPG00010047354	pseudogene	Chr3:91322408-91322908 (+)
WSB/EiJ	ENSIUOG00005032150	pseudogene	Chr3:91648950-91649448 (+)

Homology

• Gene Tree
  Gm10972
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm10972
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000118474 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118474	Ensembl Gene Model | MGI Sequence Detail	499	C57BL/6J
transcript	ENSMUST00000238219	Ensembl | MGI Sequence Detail	499	Not Applicable

References

• Summaries
  All 6

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426